scPDB - 1rdw entry

Protein Data Bank Entry:

PDB ID : 1rdw

Resolution :2.300 Å

Experimental Method : X-ray

Deposition Date : 2003-11-06

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Actin, alpha skeletal muscle
ID:	ACTS_RABIT
AC:	P68135
Organism:	Oryctolagus cuniculus
Reign:	Eukaryota
TaxID:	9986
EC Number:	/

Chains:

Chain Name:	Percentage of Residues within binding site
X	100 %

Ligand binding site composition:

B-Factor:	33.738
Number of residues:	30
Including
Standard Amino Acids:	28
Non Standard Amino Acids:	1
Water Molecules:	1
Cofactors:	ATP
Metals:

Cavity properties

Ligandability	Volume (Å3)
0.759	600.750

% Hydrophobic	% Polar
52.81	47.19
According to VolSite

Ligand :

HET Code:	LAR
Formula:	C22H31NO5S
Molecular weight:	421.550 g/mol
DrugBank ID:	DB02621
Buried Surface Area:	65.4 %
Polar Surface area:	110.16 Å2

Number of
H-Bond Acceptors:	6
H-Bond Donors:	2
Rings:	3
Aromatic rings:	0
Anionic atoms:	0
Cationic atoms:	0
Rule of Five Violation:	0
Rotatable Bonds:	1

Mass center Coordinates

X	Y	Z
92.2034	70.1102	33.5898

Binding mode :

What is Poseview ?

2D View
3D View

Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
C15	CD2	LEU- 16	4.19	0	Hydrophobic	false
C14	CB	PRO- 32	3.82	0	Hydrophobic	false
C12	CB	PRO- 32	4.07	0	Hydrophobic	false
C7	CG	PRO- 32	3.9	0	Hydrophobic	false
C9	CD1	ILE- 34	4.25	0	Hydrophobic	false
C12	CG2	ILE- 34	3.72	0	Hydrophobic	false
C8	CG	GLN- 59	4.02	0	Hydrophobic	false
C22	CD1	LEU- 67	3.77	0	Hydrophobic	false
O3	OH	TYR- 69	2.74	155.05	H-Bond (Protein Donor)	false
C13	CE2	TYR- 69	4.18	0	Hydrophobic	false
C12	CZ	TYR- 69	3.71	0	Hydrophobic	false
N1	OD1	ASP- 157	2.79	163.61	H-Bond (Ligand Donor)	false
N1	OD2	ASP- 157	3.47	120.94	H-Bond (Ligand Donor)	false
C19	CG	ARG- 183	4.16	0	Hydrophobic	false
S1	CG2	THR- 186	3.94	0	Hydrophobic	false
O5	OG1	THR- 186	2.67	173.56	H-Bond (Protein Donor)	false
S1	CD	ARG- 206	3.66	0	Hydrophobic	false
O4	OE1	GLU- 207	2.87	158.01	H-Bond (Ligand Donor)	false
C10	CG	GLU- 207	4.09	0	Hydrophobic	false
S1	CB	ARG- 210	4.17	0	Hydrophobic	false
C16	CD	ARG- 210	4.42	0	Hydrophobic	false
O4	NE	ARG- 210	3.25	121.48	H-Bond (Protein Donor)	false