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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1n2bPAFPantothenate synthetase6.3.2.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1n2bPAFPantothenate synthetase6.3.2.11.000
3ioeA7DPantothenate synthetase6.3.2.10.575
1n2iPAJPantothenate synthetase6.3.2.10.574
1n2gAPCPantothenate synthetase6.3.2.10.570
1n2eAPCPantothenate synthetase6.3.2.10.560
1n2hPAJPantothenate synthetase6.3.2.10.558
3ivxFG6Pantothenate synthetase6.3.2.10.553
5hg0SAMPantothenate synthetase/0.552
1n2jPAFPantothenate synthetase6.3.2.10.549
3coy53HPantothenate synthetase6.3.2.10.536
2x3fAPCPantothenate synthetase/0.531
3cow52HPantothenate synthetase6.3.2.10.513
3iocA5DPantothenate synthetase6.3.2.10.510
3coz54HPantothenate synthetase6.3.2.10.505
5kwvANPPantothenate synthetase/0.500
3ag6PAJPantothenate synthetase/0.498
3isjA8DPantothenate synthetase6.3.2.10.494
3iobA4DPantothenate synthetase6.3.2.10.481
4loi1YCStimulator of interferon genes protein/0.481
3iodA6DPantothenate synthetase6.3.2.10.478
1bwfATFGlycerol kinase/0.476
3imgBZ2Pantothenate synthetase6.3.2.10.471
4c13UMLUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase/0.471
1k4mNADNicotinate-nucleotide adenylyltransferase2.7.7.180.468
1icsFMN12-oxophytodienoate reductase 11.3.1.420.467
3ivgFG5Pantothenate synthetase6.3.2.10.463
1kp3ATPArgininosuccinate synthase6.3.4.50.461
4hmz18TdTDP-4-dehydro-6-deoxyglucose 3-epimerase5.1.3.270.459
2qjoNADBifunctional NMN adenylyltransferase/Nudix hydrolase2.7.7.10.454
3imeBZ2Pantothenate synthetase6.3.2.10.454
4wsoNADProbable nicotinate-nucleotide adenylyltransferase/0.453
3ivcFG4Pantothenate synthetase6.3.2.10.451
4hyvPEPPyruvate kinase 12.7.1.400.450
4xfjANPArgininosuccinate synthase/0.449
1nuuNADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.448
2hs8FMN12-oxophytodienoate reductase 31.3.1.420.448
2qs3UBEGlutamate receptor ionotropic, kainate 1/0.448
1h63FMNPentaerythritol tetranitrate reductase/0.447
2qtrNXXProbable nicotinate-nucleotide adenylyltransferase/0.446
3hyoADPPyridoxal kinase/0.446
4e2dFMNDehydrogenase/0.446
4z54GDPNeuronal-specific septin-3/0.446
3f03FMNPentaerythritol tetranitrate reductase/0.445
3jzdNADMaleylacetate reductase/0.445
3ea0ATPATPase, ParA family/0.443
4yj2GTPTubulin alpha-1B chain/0.443
1u8vFAD4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase/0.442
2f3rG5PGuanylate kinase2.7.4.80.442
3p82FMNPentaerythritol tetranitrate reductase/0.442
3muoZPRProlyl endopeptidase/0.441
3zxiTYATyrosine--tRNA ligase, mitochondrial6.1.1.10.441
4de50JDPantothenate synthetase6.3.2.10.441
3lm8VIBThiamine pyrophosphokinase2.7.6.20.440
3p67FMNPentaerythritol tetranitrate reductase/0.440