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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1kvsUPGUDP-glucose 4-epimerase5.1.3.2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1kvsUPGUDP-glucose 4-epimerase5.1.3.21.000
1udbUFGUDP-glucose 4-epimerase5.1.3.20.595
1udcUFMUDP-glucose 4-epimerase5.1.3.20.593
1a9yUPGUDP-glucose 4-epimerase5.1.3.20.592
1kvtUPGUDP-glucose 4-epimerase5.1.3.20.538
1ek6UPGUDP-glucose 4-epimerase/0.529
1xelUPGUDP-glucose 4-epimerase5.1.3.20.521
1hzjUD1UDP-glucose 4-epimerase/0.520
1lrjUD1UDP-glucose 4-epimerase5.1.3.20.510
3enkUPGUDP-glucose 4-epimerase/0.505
1a9zUPGUDP-glucose 4-epimerase5.1.3.20.504
2udpUPPUDP-glucose 4-epimerase5.1.3.20.498
1udaUFGUDP-glucose 4-epimerase5.1.3.20.478
1kvuUPGUDP-glucose 4-epimerase5.1.3.20.467
1i3kUPGUDP-glucose 4-epimerase/0.447
4fw8NAI3-oxoacyl-(Acyl-carrier-protein) reductase/0.441
2omeNADC-terminal-binding protein 2/0.440