sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1h60 | STR | Pentaerythritol tetranitrate reductase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 1h60 | STR | Pentaerythritol tetranitrate reductase | / | 1.000 | |
| 2aba | STR | Pentaerythritol tetranitrate reductase | / | 0.622 | |
| 1h61 | PDN | Pentaerythritol tetranitrate reductase | / | 0.618 | |
| 1gvr | TNL | Pentaerythritol tetranitrate reductase | / | 0.563 | |
| 1h62 | ANB | Pentaerythritol tetranitrate reductase | / | 0.547 | |
| 2cek | N8T | Acetylcholinesterase | 3.1.1.7 | 0.492 | |
| 2g24 | 7IG | Renin | 3.4.23.15 | 0.492 | |
| 2xui | TZ5 | Acetylcholinesterase | 3.1.1.7 | 0.483 | |
| 3kft | NAD | Pentaerythritol tetranitrate reductase | / | 0.482 | |
| 3hl0 | NAD | Maleylacetate reductase | / | 0.478 | |
| 5jqh | CAU | Beta-2 adrenergic receptor | / | 0.478 | |
| 2g22 | 6IG | Renin | 3.4.23.15 | 0.477 | |
| 2xup | TZ5 | Acetylcholinesterase | 3.1.1.7 | 0.474 | |
| 1h22 | E10 | Acetylcholinesterase | 3.1.1.7 | 0.469 | |
| 1q83 | TZ5 | Acetylcholinesterase | 3.1.1.7 | 0.469 | |
| 1q84 | TZ4 | Acetylcholinesterase | 3.1.1.7 | 0.469 | |
| 4z61 | ILE_THR_GLN_TYS_TYS | Phytosulfokine receptor 1 | 2.7.11.1 | 0.469 | |
| 2iko | 7IG | Renin | 3.4.23.15 | 0.467 | |
| 4bfz | ZVZ | Pantothenate kinase | 2.7.1.33 | 0.465 | |
| 1x1a | SAM | C-20 methyltransferase | / | 0.463 | |
| 2g1n | 1IG | Renin | 3.4.23.15 | 0.463 | |
| 2g1s | 4IG | Renin | 3.4.23.15 | 0.463 | |
| 3oqk | S52 | Renin | 3.4.23.15 | 0.463 | |
| 2xuo | TZ4 | Acetylcholinesterase | 3.1.1.7 | 0.462 | |
| 4dri | RAP | Serine/threonine-protein kinase mTOR | 2.7.11.1 | 0.462 | |
| 4dri | RAP | Peptidyl-prolyl cis-trans isomerase FKBP5 | 5.2.1.8 | 0.462 | |
| 1zgc | A2E | Acetylcholinesterase | 3.1.1.7 | 0.461 | |
| 2ha6 | SCK | Acetylcholinesterase | 3.1.1.7 | 0.461 | |
| 1zgb | A1E | Acetylcholinesterase | 3.1.1.7 | 0.459 | |
| 2yq9 | 2AM | 2',3'-cyclic-nucleotide 3'-phosphodiesterase | 3.1.4.37 | 0.459 | |
| 1d4a | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.458 | |
| 2fw3 | BUI | Carnitine O-palmitoyltransferase 2, mitochondrial | 2.3.1.21 | 0.457 | |
| 1bil | 0IU | Renin | 3.4.23.15 | 0.456 | |
| 1odc | A8B | Acetylcholinesterase | 3.1.1.7 | 0.456 | |
| 3g70 | A5T | Renin | 3.4.23.15 | 0.455 | |
| 2g5w | 8PG | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 0.454 | |
| 2j3q | TFL | Acetylcholinesterase | 3.1.1.7 | 0.454 | |
| 2xuq | TZ4 | Acetylcholinesterase | 3.1.1.7 | 0.454 | |
| 3qe2 | FMN | NADPH--cytochrome P450 reductase | / | 0.454 | |
| 4m0f | 1YK | Acetylcholinesterase | 3.1.1.7 | 0.453 | |
| 3oad | LPO | Renin | 3.4.23.15 | 0.452 | |
| 2xuj | TZ5 | Acetylcholinesterase | 3.1.1.7 | 0.451 | |
| 4mrm | 2BY | Gamma-aminobutyric acid type B receptor subunit 1 | / | 0.451 | |
| 1ps9 | MDE | 2,4-dienoyl-CoA reductase | 1.3.1.34 | 0.450 | |
| 2iku | LIY | Renin | 3.4.23.15 | 0.450 | |
| 2q1t | NAD | Putative nucleotide sugar epimerase/ dehydratase | / | 0.450 | |
| 3oag | LPQ | Renin | 3.4.23.15 | 0.450 | |
| 4b7z | Q4Q | Acetylcholinesterase | 3.1.1.7 | 0.450 | |
| 4q0k | GA3 | Phytohormone-binding protein | / | 0.450 | |
| 1u65 | CP0 | Acetylcholinesterase | 3.1.1.7 | 0.449 | |
| 2g21 | L1B | Renin | 3.4.23.15 | 0.449 | |
| 1icq | OPD | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.448 | |
| 1qti | GNT | Acetylcholinesterase | 3.1.1.7 | 0.448 | |
| 1xva | SAM | Glycine N-methyltransferase | 2.1.1.20 | 0.448 | |
| 2a0x | DIH | Purine nucleoside phosphorylase | 2.4.2.1 | 0.448 | |
| 2ckm | AA7 | Acetylcholinesterase | 3.1.1.7 | 0.448 | |
| 2g1y | 5IG | Renin | 3.4.23.15 | 0.448 | |
| 3b4y | F42 | F420-dependent glucose-6-phosphate dehydrogenase | / | 0.448 | |
| 3ukf | GDU | UDP-galactopyranose mutase | / | 0.448 | |
| 3dy8 | 5GP | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.447 | |
| 3g6z | A7T | Renin | 3.4.23.15 | 0.447 | |
| 2zsa | ADP | Pantothenate kinase | 2.7.1.33 | 0.446 | |
| 1eve | E20 | Acetylcholinesterase | 3.1.1.7 | 0.445 | |
| 2xq0 | BES | Leukotriene A-4 hydrolase homolog | 3.3.2.6 | 0.445 | |
| 1amo | FMN | NADPH--cytochrome P450 reductase | / | 0.444 | |
| 2jf0 | HBP | Acetylcholinesterase | 3.1.1.7 | 0.443 | |
| 2lfo | GCH | Fatty acid-binding protein, liver | / | 0.443 | |
| 3aez | GDP | Pantothenate kinase | 2.7.1.33 | 0.443 | |
| 3own | 3OW | Renin | 3.4.23.15 | 0.443 | |
| 4ara | C56 | Acetylcholinesterase | 3.1.1.7 | 0.443 | |
| 1i7p | FAD | NADH-cytochrome b5 reductase 3 | 1.6.2.2 | 0.442 | |
| 2g1o | 2IG | Renin | 3.4.23.15 | 0.442 | |
| 4bfw | ZVW | Pantothenate kinase | 2.7.1.33 | 0.442 | |
| 5dp2 | NAP | CurF | / | 0.442 | |
| 1obn | ASV | Isopenicillin N synthase | 1.21.3.1 | 0.441 | |
| 2b3d | FAD | Modulator of drug activity B | / | 0.441 | |
| 2wu4 | HBP | Acetylcholinesterase | 3.1.1.7 | 0.441 | |
| 2xug | TZ4 | Acetylcholinesterase | 3.1.1.7 | 0.441 | |
| 2yd0 | BES | Endoplasmic reticulum aminopeptidase 1 | 3.4.11 | 0.441 | |
| 3fcj | FAD | Nitroalkane oxidase | 1.7.3.1 | 0.441 | |
| 4a6r | TA8 | Probable aminotransferase | / | 0.441 | |
| 2qjo | NAD | Bifunctional NMN adenylyltransferase/Nudix hydrolase | 2.7.7.1 | 0.440 | |
| 2w6c | BM4 | Acetylcholinesterase | 3.1.1.7 | 0.440 | |
| 3af1 | GDP | Pantothenate kinase | 2.7.1.33 | 0.440 | |
| 4jay | NAP | UDP-N-acetylenolpyruvoylglucosamine reductase | / | 0.440 | |
| 4z5w | ILE_THR_GLN_TYS_TYS | Phytosulfokine receptor 1 | 2.7.11.1 | 0.440 |