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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5kgh ACO Predicted acetyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5kgh ACOPredicted acetyltransferase / 1.324
5kgp ACOPredicted acetyltransferase / 1.120
5kf9 ACOPredicted acetyltransferase / 1.105
5kf1 ACOPredicted acetyltransferase / 1.099
5kf8 ACOPredicted acetyltransferase / 1.096
5kf2 ACOPredicted acetyltransferase / 1.082
5kgj ACOPredicted acetyltransferase / 1.049
3s6f COAUncharacterized protein / 0.853
4ag7 COAGlucosamine 6-phosphate N-acetyltransferase / 0.841
1wwz ACOUncharacterized protein / 0.840
1z4r ACOHistone acetyltransferase KAT2A 2.3.1.48 0.837
4hkf ACOAlpha-tubulin N-acetyltransferase 1 / 0.831
4zm6 ACON-acetyl-beta-D glucosaminidase / 0.831
5h84 1VUHistone acetyltransferase KAT2A 2.3.1.48 0.828
2r8v ACOAmino-acid acetyltransferase / 0.825
2cns ACORibosomal-protein-alanine acetyltransferase / 0.823
5h86 BCOHistone acetyltransferase KAT2A 2.3.1.48 0.809
1cjw COTSerotonin N-acetyltransferase / 0.803
1qsr ACOHAT A1 / 0.796
2a4n COAAac(6')-Ii protein / 0.782
2ou2 ACOHistone acetyltransferase KAT5 / 0.782
3to6 LYS_CMCHistone acetyltransferase ESA1 / 0.781
4xnh ACON-terminal acetyltransferase A complex subunit NAT5 2.3.1 0.781
2b3v ACODiamine acetyltransferase 1 / 0.776
2fiw ACOGCN5-related N-acetyltransferase:Aminotransferase, class-II / 0.776
2rc4 ACOHistone acetyltransferase KAT6A / 0.776
2vez ACOGlucosamine 6-phosphate acetyltransferase, putative / 0.776
2zpa ACOtRNA(Met) cytidine acetyltransferase TmcA / 0.775
2bei ACODiamine acetyltransferase 2 2.3.1.57 0.774
1b87 ACOAac(6')-Ii protein / 0.773
1p0h COAMycothiol acetyltransferase 2.3.1.189 0.773
3te4 ACODopamine N-acetyltransferase / 0.771
1ghe ACOAcetyltransferase 2.3.1 0.770
3bj7 COADiamine acetyltransferase 1 / 0.768
4kvx ACON-terminal acetyltransferase A complex catalytic subunit ard1 2.3.1.88 0.764
2ozu ACOHistone acetyltransferase KAT6A / 0.755
1j4j ACOAcetyltransferase 2.3.1 0.754
4gs4 ACOAlpha-tubulin N-acetyltransferase 1 / 0.753
1pua COAHAT A1 / 0.751
4lx9 ACON-alpha-acetyltransferase 2.3.1 0.751
1n71 COAAac(6')-Ii protein / 0.749
1kuv CA5Serotonin N-acetyltransferase / 0.748
1bob ACOHistone acetyltransferase type B catalytic subunit / 0.741
1mja COAHistone acetyltransferase ESA1 / 0.741
1tiq COASpermidine/spermine N(1)-acetyltransferase / 0.740
2fxf ACODiamine acetyltransferase 1 / 0.738
3exn ACOProbable acetyltransferase / 0.738
3d2m COAAmino-acid acetyltransferase / 0.735
3pgp ACOUncharacterized protein / 0.735
1l0c COTSerotonin N-acetyltransferase / 0.734
2c27 ACOMycothiol acetyltransferase 2.3.1.189 0.732
3zj0 ACOPutative acetyltransferase OgpAT / 0.731
4u9v ACON-alpha-acetyltransferase 40 2.3.1 0.731
5a27 MYAGlycylpeptide N-tetradecanoyltransferase / 0.720
1ozp ACOMycothiol acetyltransferase 2.3.1.189 0.719
1p0h ACOMycothiol acetyltransferase 2.3.1.189 0.719
1m1d LYXHAT A1 / 0.714
3f0a ACOSpermidine N(1)-acetyltransferase / 0.714
1i12 ACOGlucosamine 6-phosphate N-acetyltransferase / 0.709
2cy2 ACOProbable acetyltransferase / 0.705
2vbq BSJAminoglycoside N(6')-acetyltransferase type 1 / 0.697
2bsw CAOProbable acetyltransferase / 0.695
3r96 ACOMccE protein / 0.692
3cz7 ACOHistone acetyltransferase RTT109 2.3.1.48 0.689
1bo4 COAAminoglycoside-(3)-N-acetyltransferase / 0.686
1kux CA3Serotonin N-acetyltransferase / 0.686
3r1k COAN-acetyltransferase Eis / 0.686
1kuy COTSerotonin N-acetyltransferase / 0.684
4ua3 COAN-alpha-acetyltransferase 40 2.3.1 0.683
1qsm ACOHistone acetyltransferase HPA2 / 0.680
2jdc CAOProbable acetyltransferase / 0.680
3d2p COAAmino-acid acetyltransferase / 0.680
3k9u ACOSpermidine N(1)-acetyltransferase / 0.680
2b58 COADiamine acetyltransferase 1 / 0.679
5kf2 COAPredicted acetyltransferase / 0.678
3r95 ACOMccE protein / 0.675
4r3k COAN-alpha-acetyltransferase 2.3.1 0.675
3fbu COAAcetyltransferase, GNAT family / 0.672
4xpd ACON-terminal acetyltransferase A complex subunit NAT5 2.3.1 0.671
4a31 MYAGlycylpeptide N-tetradecanoyltransferase / 0.669
2giv ACOHistone acetyltransferase KAT8 / 0.668
3vwe COAAlpha-tubulin N-acetyltransferase 1 / 0.667
2psw COAN-alpha-acetyltransferase 50 / 0.664
2zw5 COABleomycin acetyltransferase / 0.664
2ob0 ACON-alpha-acetyltransferase 50 / 0.660
4ag9 COAGlucosamine 6-phosphate N-acetyltransferase / 0.658
4psw COAHistone acetyltransferase type B catalytic subunit / 0.656
1mj9 COAHistone acetyltransferase ESA1 / 0.655
3vwd ACOAlpha-tubulin N-acetyltransferase 1 / 0.655
1ib1 COTSerotonin N-acetyltransferase / 0.654
4u9z COAAlpha-tubulin N-acetyltransferase 1 / 0.653
5ag5 MYAGlycylpeptide N-tetradecanoyltransferase / 0.652