scPDB - 2fxf entry

Protein Data Bank Entry:

PDB ID : 2fxf

Resolution :2.000 Å

Experimental Method : X-ray

Deposition Date : 2006-02-05

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Diamine acetyltransferase 1
ID:	SAT1_HUMAN
AC:	P21673
Organism:	Homo sapiens
Reign:	Eukaryota
TaxID:	9606
EC Number:	/

Chains:

Chain Name:	Percentage of Residues within binding site
A	3 %
B	97 %

Ligand binding site composition:

B-Factor:	41.621
Number of residues:	36
Including
Standard Amino Acids:	34
Non Standard Amino Acids:	1
Water Molecules:	1
Cofactors:
Metals:	CA

Cavity properties

Ligandability	Volume (Å3)
0.958	1481.625

% Hydrophobic	% Polar
43.74	56.26
According to VolSite

Ligand :

HET Code:	ACO
Formula:	C23H34N7O17P3S
Molecular weight:	805.539 g/mol
DrugBank ID:	-
Buried Surface Area:	55.25 %
Polar Surface area:	429.68 Å2

Number of
H-Bond Acceptors:	22
H-Bond Donors:	5
Rings:	3
Aromatic rings:	2
Anionic atoms:	4
Cationic atoms:	0
Rule of Five Violation:	2
Rotatable Bonds:	20

Mass center Coordinates

X	Y	Z
32.9635	-0.998784	5.13035

Binding mode :

What is Poseview ?

2D View
3D View

Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
C6P	CD1	LEU- 24	3.94	0	Hydrophobic	false
CH3	CD2	LEU- 24	3.73	0	Hydrophobic	false
C6P	CE2	TYR- 27	3.93	0	Hydrophobic	false
CEP	CZ	PHE- 94	3.81	0	Hydrophobic	false
CH3	CB	PHE- 94	4.09	0	Hydrophobic	false
N4P	O	PHE- 94	2.74	158.34	H-Bond (Ligand Donor)	false
C6P	CD1	PHE- 95	3.71	0	Hydrophobic	false
CEP	CG2	VAL- 96	4.32	0	Hydrophobic	false
CAP	CB	VAL- 96	4.33	0	Hydrophobic	false
O9P	N	VAL- 96	2.73	171.47	H-Bond (Protein Donor)	false
CAP	CG	ARG- 101	3.93	0	Hydrophobic	false
O9P	NE	ARG- 101	3.4	120.92	H-Bond (Protein Donor)	false
O5A	N	GLY- 102	2.86	165.42	H-Bond (Protein Donor)	false
O1A	N	GLY- 104	2.67	145.35	H-Bond (Protein Donor)	false
O4A	N	GLY- 106	2.82	159.91	H-Bond (Protein Donor)	false
O2A	N	SER- 107	2.89	149.21	H-Bond (Protein Donor)	false
O2A	OG	SER- 107	2.84	143.74	H-Bond (Protein Donor)	false
S1P	CG1	VAL- 129	4.45	0	Hydrophobic	false
O5P	ND2	ASN- 133	2.85	161.03	H-Bond (Protein Donor)	false
O5P	OG	SER- 136	2.58	138.99	H-Bond (Protein Donor)	false
CCP	CZ	PHE- 139	3.96	0	Hydrophobic	false
CDP	CD2	PHE- 139	4.16	0	Hydrophobic	false
C5B	CD1	PHE- 139	3.75	0	Hydrophobic	false
S1P	CE2	TYR- 140	3.95	0	Hydrophobic	false
O9A	CZ	ARG- 142	3.66	0	Ionic (Protein Cationic)	false
O9A	NH1	ARG- 142	2.67	142.29	H-Bond (Protein Donor)	false
O7A	CZ	ARG- 143	3.91	0	Ionic (Protein Cationic)	false
O9A	CZ	ARG- 143	3.92	0	Ionic (Protein Cationic)	false
O7A	NH2	ARG- 143	2.93	162.46	H-Bond (Protein Donor)	false
O9A	NH1	ARG- 143	3.18	165.93	H-Bond (Protein Donor)	false