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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4z9r FMN Omega-3 polyunsaturated fatty acid synthase subunit PfaD

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 1.156
4yx6 FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.996
2gjn FMNNitronate monooxygenase 1.13.12.16 0.835
4cw5 FMNDfnA / 0.822
4z38 FMNMlnA / 0.822
2gjl FMNNitronate monooxygenase 1.13.12.16 0.803
2zru FMNIsopentenyl-diphosphate delta-isomerase / 0.793
2h8x FMNXenA / 0.778
1kbi FMNCytochrome b2, mitochondrial 1.1.2.3 0.773
1lm1 FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.751
1vhn FMNtRNA-dihydrouridine synthase / 0.750
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.750
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.749
4ycp FMNtRNA-dihydrouridine(16) synthase / 0.744
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.738
3l5l FMNXenobiotic reductase / 0.738
3l67 FMNXenobiotic reductase / 0.734
2djx FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.733
4utm FNRXenobiotic reductase / 0.729
3hgs FMN12-oxophytodienoate reductase 3 1.3.1.42 0.726
4uth FMNXenobiotic reductase / 0.724
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.722
3gye FMNDihydroorotate dehydrogenase (fumarate) / 0.721
4qnw FMNChanoclavine-I aldehyde reductase easA / 0.720
1h66 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.719
1llw FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.718
1h50 FMNPentaerythritol tetranitrate reductase / 0.717
4utl FNRXenobiotic reductase / 0.717
1gg5 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.715
1z44 FMNNADPH dehydrogenase / 0.713
3c3n FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.713
1ofe FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.712
4a3u FMNNADH:flavin oxidoreductase/NADH oxidase / 0.712
4rnw FMNNADPH dehydrogenase 1 1.6.99.1 0.711
1d4a FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.709
1dxo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.709
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.709
2gqa FMNNADH:flavin oxidoreductase Sye1 / 0.709
2hs8 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.709
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.708
2z6i FMN2-nitropropane dioxygenase / 0.708
4df2 FMNNADPH dehydrogenase / 0.708
4iql FMNEnoyl-(Acyl-carrier-protein) reductase II / 0.708
5a4k FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.708
1h63 FMNPentaerythritol tetranitrate reductase / 0.706
1vcf FMNIsopentenyl-diphosphate delta-isomerase / 0.706
2djl FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.705
2gou FMNNADH:flavin oxidoreductase Sye1 / 0.705
1q45 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.704
1ofd FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.703
1oya FMNNADPH dehydrogenase 1 1.6.99.1 0.703
1qcw FNSCytochrome b2, mitochondrial 1.1.2.3 0.703
3n14 FMNXenobiotic reductase / 0.700
3tjl FMNNADPH dehydrogenase / 0.700
3aty FMNProstaglandin F2a synthase / 0.698
4e2d FMNDehydrogenase / 0.698
4jic FMNGTN Reductase / 0.696
4m5p FMNNADPH dehydrogenase / 0.696
2e77 FMNLactate oxidase / 0.694
1szf FMNCytochrome b2, mitochondrial 1.1.2.3 0.693
1uum FMNDihydroorotate dehydrogenase (quinone), mitochondrial 1.3.5.2 0.692
1z48 FMNNADPH dehydrogenase / 0.692
3p62 FMNPentaerythritol tetranitrate reductase / 0.692
4aws FMNNADH:flavin oxidoreductase Sye1 / 0.692
3p82 FMNPentaerythritol tetranitrate reductase / 0.691
3n3b FMNProtein NrdI / 0.690
4xq6 FMNDihydroorotate dehydrogenase (quinone) / 0.690
3atz FMNProstaglandin F2a synthase / 0.689
4awt FMNNADH:flavin oxidoreductase Sye1 / 0.689
4ef9 FMNDihydroorotate dehydrogenase (fumarate) / 0.689
4j8p FMNFlavodoxin / 0.689
3hf3 FMNChromate reductase / 0.688
4b5n FMNNAD(P)H:flavin oxidoreductase Sye4 / 0.688
1bwl FMNNADPH dehydrogenase 1 1.6.99.1 0.687
2z9d FMNFMN-dependent NADH-azoreductase / 0.687
3n3a FMNProtein NrdI / 0.686
3p8i FMNPentaerythritol tetranitrate reductase / 0.683
4rnx FMNNADPH dehydrogenase 1 1.6.99.1 0.683
1t0i FMNNAD(P)H-dependent FMN reductase LOT6 / 0.681
4qai FMNNADPH dehydrogenase / 0.680
4k7y FMNNADPH dehydrogenase 1 1.6.99.1 0.678
4hs4 FMNChromate reductase / 0.677
4rnu FMNNADPH dehydrogenase 1 1.6.99.1 0.677
1icq FMN12-oxophytodienoate reductase 1 1.3.1.42 0.676
1siq FADGlutaryl-CoA dehydrogenase, mitochondrial 1.3.8.6 0.676
3oix FMNDihydroorotate dehydrogenase / 0.675
1h7w FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.674
2q3r FMN12-oxophytodienoate reductase 1 1.3.1.42 0.674
4eep FMNPhototropin-2 2.7.11.1 0.674
1bwk FMNNADPH dehydrogenase 1 1.6.99.1 0.673
1gte FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.673
2gr3 FADFerredoxin reductase / 0.673
2bsl FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.672
3hgr FMN12-oxophytodienoate reductase 1 1.3.1.42 0.672
4nmc FADBifunctional protein PutA / 0.672
1k02 FMNNADPH dehydrogenase 1 1.6.99.1 0.670
4n65 FMNFMN-dependent NADH-azoreductase 1 / 0.669
1p4m FMNRiboflavin kinase 2.7.1.26 0.668
1vji FMN12-oxophytodienoate reductase 1 1.3.1.42 0.668
3p67 FMNPentaerythritol tetranitrate reductase / 0.668
2ohj FMNType A flavoprotein FprA 1 0.667
3f03 FMNPentaerythritol tetranitrate reductase / 0.667
5djt FMNNPH1-2 / 0.667
1llz FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.666
1icp FMN12-oxophytodienoate reductase 1 1.3.1.42 0.665
3n39 FMNProtein NrdI / 0.665
3zho FMNNAD(P)H dehydrogenase (quinone) / 0.665
1qr2 FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.664
2abb FMNPentaerythritol tetranitrate reductase / 0.664
4h6p FMNChromate reductase / 0.664
5eai FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.664
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.663
4h6k FMNNADPH dehydrogenase 1 1.6.99.1 0.663
1kbj FMNCytochrome b2, mitochondrial 1.1.2.3 0.662
2q3o FMN12-oxophytodienoate reductase 3 1.3.1.42 0.662
3w77 FMNFMN-dependent NADH-azoreductase / 0.662
4hh0 FMNAppA protein / 0.662
1fcb FMNCytochrome b2, mitochondrial 1.1.2.3 0.661
1ics FMN12-oxophytodienoate reductase 1 1.3.1.42 0.661
1yrx FMNAppA protein / 0.660
2du2 FMNLactate oxidase / 0.660
1gox FMNPeroxisomal (S)-2-hydroxy-acid oxidase 1.1.3.15 0.659
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.658
3hjk FADVivid PAS protein VVD / 0.657
4ees FMNPhototropin-2 2.7.11.1 0.657
1k8y 13PTryptophan synthase alpha chain / 0.655
3p74 FMNPentaerythritol tetranitrate reductase / 0.655
4hhd FMNPhototropin-1 2.7.11.1 0.655
1ea0 FMNGlutamate synthase [NADPH] large chain 1.4.1.13 0.653
1jub FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.653
1jue FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.653
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.653
2g37 FADProline dehydrogenase / 0.651
2v1a FMNNPH1-1 / 0.651
1gwj FMNMorphinone reductase / 0.650
3kru FMNNADH:flavin oxidoreductase/NADH oxidase / 0.650