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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4pp6 STL Estrogen receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4pp6 STLEstrogen receptor / 0.950
3erd DESEstrogen receptor / 0.785
4zn7 DESEstrogen receptor / 0.783
1x7e 244Estrogen receptor / 0.778
1gwq ZTWEstrogen receptor / 0.770
1zaf 789Estrogen receptor beta / 0.753
1x78 244Estrogen receptor beta / 0.748
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1x76 697Estrogen receptor beta / 0.734
2b1z 17MEstrogen receptor / 0.733
4e5l DBHPolymerase acidic protein / 0.722
4iw6 1GUEstrogen receptor / 0.721
2g5o DRQEstrogen receptor / 0.714
1zky 689Estrogen receptor / 0.711
2yja ESTEstrogen receptor / 0.701
4pxm ESTEstrogen receptor / 0.701
4dma 0L8Estrogen receptor / 0.700
1x7r GENEstrogen receptor / 0.696
2q70 DC8Estrogen receptor / 0.692
1u9e 397Estrogen receptor beta / 0.689
3l03 4OHEstrogen receptor / 0.687
3oll ESTEstrogen receptor beta / 0.684
3ols ESTEstrogen receptor beta / 0.676
5hyr ESTEstrogen receptor / 0.676
2j7x ESTEstrogen receptor beta / 0.674
2d09 FLVBiflaviolin synthase CYP158A2 / 0.668
2p7z OHTEstrogen-related receptor gamma / 0.666
2gpv OHTEstrogen-related receptor gamma / 0.659
4j26 ESTEstrogen receptor beta / 0.659
2qa8 GENEstrogen receptor / 0.655
1yye 196Estrogen receptor beta / 0.653
2gpu OHTEstrogen-related receptor gamma / 0.652
3ert OHTEstrogen receptor / 0.652
4iwc 1GVEstrogen receptor / 0.651