scPDB - 2p7z entry

Protein Data Bank Entry:

PDB ID : 2p7z

Resolution :2.500 Å

Experimental Method : X-ray

Deposition Date : 2007-03-21

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Estrogen-related receptor gamma
ID:	ERR3_HUMAN
AC:	P62508
Organism:	Homo sapiens
Reign:	Eukaryota
TaxID:	9606
EC Number:	/

Chains:

Chain Name:	Percentage of Residues within binding site
A	100 %

Ligand binding site composition:

B-Factor:	26.642
Number of residues:	31
Including
Standard Amino Acids:	30
Non Standard Amino Acids:	0
Water Molecules:	1
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
1.504	465.750

% Hydrophobic	% Polar
68.12	31.88
According to VolSite

Ligand :

HET Code:	OHT
Formula:	C26H30NO2
Molecular weight:	388.522 g/mol
DrugBank ID:	DB04468
Buried Surface Area:	68.24 %
Polar Surface area:	33.9 Å2

Number of
H-Bond Acceptors:	2
H-Bond Donors:	2
Rings:	3
Aromatic rings:	3
Anionic atoms:	0
Cationic atoms:	1
Rule of Five Violation:	0
Rotatable Bonds:	8

Mass center Coordinates

X	Y	Z
48.8406	-30.3735	-94.7561

Binding mode :

What is Poseview ?

2D View
3D View

Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
C13	CD2	LEU- 265	4.17	0	Hydrophobic	false
C2	CB	LEU- 268	4.37	0	Hydrophobic	false
C19	SG	CYS- 269	3.74	0	Hydrophobic	false
C3	CD2	LEU- 271	4.3	0	Hydrophobic	false
C23	CB	ALA- 272	4.39	0	Hydrophobic	false
C2	CB	ALA- 272	3.64	0	Hydrophobic	false
C21	CB	ALA- 272	3.71	0	Hydrophobic	false
N24	OD2	ASP- 273	3.27	0	Ionic (Ligand Cationic)	false
N24	OD1	ASP- 273	3.97	0	Ionic (Ligand Cationic)	false
O4	OE2	GLU- 275	2.75	135.94	H-Bond (Ligand Donor)	false
C23	CD1	LEU- 276	4.46	0	Hydrophobic	false
C21	CZ3	TRP- 305	3.44	0	Hydrophobic	false
C16	CE	MET- 306	4.01	0	Hydrophobic	false
C22	CE	MET- 306	3.68	0	Hydrophobic	false
C3	CD1	LEU- 309	4.46	0	Hydrophobic	false
C5	CB	LEU- 309	3.5	0	Hydrophobic	false
C22	CD1	LEU- 309	3.91	0	Hydrophobic	false
C9	CE1	TYR- 326	4.18	0	Hydrophobic	false
C13	CD2	LEU- 342	3.84	0	Hydrophobic	false
C10	CD1	LEU- 345	3.94	0	Hydrophobic	false
C10	CD1	ILE- 349	4.17	0	Hydrophobic	false
C23	CE2	PHE- 435	4.02	0	Hydrophobic	false
C15	CB	PHE- 435	3.22	0	Hydrophobic	false
C14	CD1	ILE- 438	3.7	0	Hydrophobic	false
C14	CD1	LEU- 440	3.97	0	Hydrophobic	false
O4	O	HOH- 525	3.27	120.24	H-Bond (Protein Donor)	false