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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4m0c FMN FMN-dependent NADH-azoreductase 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4m0c FMNFMN-dependent NADH-azoreductase 1 / 1.102
4n65 FMNFMN-dependent NADH-azoreductase 1 / 0.860
1t5b FMNFMN-dependent NADH-azoreductase / 0.822
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.784
5a4k FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.781
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.780
3g5m FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.778
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.776
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.772
2z9d FMNFMN-dependent NADH-azoreductase / 0.771
2ohh FMNType A flavoprotein FprA 1 0.766
4n9q FMNFMN-dependent NADH-azoreductase 1 / 0.766
1dxo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.763
1d4a FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.761
1gg5 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.761
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.760
1h66 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.759
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.758
1dxq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.757
4r81 FMNPredicted NADH dehydrogenase / 0.753
5eai FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.743
4gi5 FADPutative NAD(P)H dehydrogenase (Quinone) / 0.738
1qr2 FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.736
4j8p FMNFlavodoxin / 0.736
2q9u FMNA-type flavoprotein / 0.731
4qoe FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.731
4zvn FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.731
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.730
4zvl FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.724
3rpe FADPutative modulator of drug activity / 0.722
4hs4 FMNChromate reductase / 0.722
4bmo FMNProtein NrdI / 0.719
1ofv FMNFlavodoxin / 0.714
3klb FMNUncharacterized protein / 0.714
1czn FMNFlavodoxin / 0.711
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.710
4h6p FMNChromate reductase / 0.700
3w77 FMNFMN-dependent NADH-azoreductase / 0.699
1ycg FMNNitric oxide reductase 1 0.698
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.698
3esz FMNFlavodoxin / 0.695
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.693
1azl FMNFlavodoxin / 0.692
1ycf FMNNitric oxide reductase 1 0.691
1z48 FMNNADPH dehydrogenase / 0.689
3qfr FMNNADPH--cytochrome P450 reductase / 0.689
1vji FMN12-oxophytodienoate reductase 1 1.3.1.42 0.688
1vhn FMNtRNA-dihydrouridine synthase / 0.687
1ych FMNNitric oxide reductase 1 0.686
4ttc FMNIodotyrosine deiodinase 1 / 0.685
3n39 FMNProtein NrdI / 0.684
2ohi FMNType A flavoprotein FprA 1 0.683
2v5u FMNFlavodoxin / 0.682
1bwl FMNNADPH dehydrogenase 1 1.6.99.1 0.676
3n3b FMNProtein NrdI / 0.676
2v5v FMNFlavodoxin / 0.675
4tmb FMNOld yellow enzyme / 0.675
3lcm FADPutative oxidoreductase / 0.674
3l67 FMNXenobiotic reductase / 0.673
4cw5 FMNDfnA / 0.673
4yco FMNtRNA-dihydrouridine(16) synthase / 0.671
1akw FMNFlavodoxin / 0.670
1oyc FMNNADPH dehydrogenase 1 1.6.99.1 0.670
2bf4 FMNNADPH--cytochrome P450 reductase / 0.670
3tjl FMNNADPH dehydrogenase / 0.670
4m5p FMNNADPH dehydrogenase / 0.670
3f6s FMNFlavodoxin / 0.669
3nf4 FADAcyl-CoA dehydrogenase domain-containing protein / 0.669
4qnw FMNChanoclavine-I aldehyde reductase easA / 0.669
2ohj FMNType A flavoprotein FprA 1 0.668
1amo FMNNADPH--cytochrome P450 reductase / 0.667
3qe2 FMNNADPH--cytochrome P450 reductase / 0.667
3b05 FNRIsopentenyl-diphosphate delta-isomerase / 0.664
3ojw FMNNADPH--cytochrome P450 reductase / 0.664
1q45 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.663
2fcr FMNFlavodoxin / 0.663
3n3a FMNProtein NrdI / 0.663
5tgz FMNCannabinoid receptor 1 / 0.663
1ja0 FMNNADPH--cytochrome P450 reductase / 0.662
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.662
3p8j FMNPentaerythritol tetranitrate reductase / 0.661
1ofd FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.659
5xr8 FMNCannabinoid receptor 1 / 0.658
1siq FADGlutaryl-CoA dehydrogenase, mitochondrial 1.3.8.6 0.656
1xyy FMNFlavodoxin / 0.656
1ahn FMNFlavodoxin 1 / 0.654
1wsb FMNFlavodoxin / 0.654
1akr FMNFlavodoxin / 0.653
2q3o FMN12-oxophytodienoate reductase 3 1.3.1.42 0.653
4oxx FMNCindoxin / 0.653
4qai FMNNADPH dehydrogenase / 0.653
4ycp FMNtRNA-dihydrouridine(16) synthase / 0.653
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.653
4y9l FADAcyl-CoA dehydrogenase family member 11 / 0.651
2fre FMNNAD(P)H-flavin oxidoreductase / 0.650
4dy4 FMNNAD(P)H dehydrogenase (quinone) / 0.650