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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4j6b PLO Cytochrome P450 monooxygenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4j6b PLOCytochrome P450 monooxygenase / 1.073
4j6c STRCytochrome P450 monooxygenase / 0.913
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4e5l DBHPolymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
4jbt ASDCytochrome P450 monooxygenase / 0.730
3uzx AOX3-oxo-5-beta-steroid 4-dehydrogenase / 0.722
1ya3 STRMineralocorticoid receptor / 0.713
1g50 ESTEstrogen receptor / 0.698
3uzx AOM3-oxo-5-beta-steroid 4-dehydrogenase / 0.683
2g5o DRQEstrogen receptor / 0.681
4r20 AERCytochrome P450 family 17 polypeptide 2 / 0.681
1zhy CLROxysterol-binding protein homolog 4 / 0.679
1p93 DEXGlucocorticoid receptor / 0.678
2a3i C0RMineralocorticoid receptor / 0.677
5dx3 ESTEstrogen receptor / 0.672
1lri CLRBeta-elicitin cryptogein / 0.660
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1jtv TESEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.659
2abi 1CAMineralocorticoid receptor / 0.659
2yja ESTEstrogen receptor / 0.658
5h8t RTLRetinol-binding protein 1 / 0.657
1kdk DHTSex hormone-binding globulin / 0.656
4j24 ESTEstrogen receptor beta / 0.655
1xf0 ASDAldo-keto reductase family 1 member C3 / 0.654
1ot7 IU5Bile acid receptor / 0.652
2qgt EEDEstrogen receptor / 0.651
3w5t LHPVitamin D3 receptor / 0.650
4pxm ESTEstrogen receptor / 0.650