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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4da0 GNG Purine nucleoside phosphorylase DeoD-type 2.4.2.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4da0 GNGPurine nucleoside phosphorylase DeoD-type 2.4.2.1 0.745
4dae 6CRPurine nucleoside phosphorylase DeoD-type 2.4.2.1 0.726
4dan 2FAPurine nucleoside phosphorylase DeoD-type 2.4.2.1 0.715
3uay ADNPurine nucleoside phosphorylase DeoD-type / 0.704
3uaw ADNPurine nucleoside phosphorylase DeoD-type / 0.694
4da8 BG2Purine nucleoside phosphorylase DeoD-type 2.4.2.1 0.688
3fow IMHPurine nucleoside phosphorylase / 0.686
3uax NOSPurine nucleoside phosphorylase DeoD-type / 0.677
1pr0 NOSPurine nucleoside phosphorylase DeoD-type / 0.675
1pr5 TBNPurine nucleoside phosphorylase DeoD-type / 0.671
2i4t UA2Purine nucleoside phosphorylase, putative / 0.671
1pr4 MTPPurine nucleoside phosphorylase DeoD-type / 0.667
1je1 GMPPurine nucleoside phosphorylase / 0.661
4e5f 0N7Polymerase acidic protein / 0.660
4ttj FMCPurine nucleoside phosphorylase DeoD-type / 0.659
4ts9 FMCPurine nucleoside phosphorylase DeoD-type / 0.657
1a69 FMBPurine nucleoside phosphorylase DeoD-type / 0.654
3c74 ANUUridine phosphorylase 2.4.2.3 0.651
4tti FMCPurine nucleoside phosphorylase DeoD-type / 0.650