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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ce3 L4V ATP-dependent molecular chaperone HSP82

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ce3 L4VATP-dependent molecular chaperone HSP82 / 0.914
4ce2 BO5ATP-dependent molecular chaperone HSP82 / 0.781
2xx4 13IATP-dependent molecular chaperone HSP82 / 0.779
4ce1 7FKATP-dependent molecular chaperone HSP82 / 0.778
1u0z RDCEndoplasmin / 0.752
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
2puc GUNHTH-type transcriptional repressor PurR / 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4e5l DBHPolymerase acidic protein / 0.744
1qy8 RDIEndoplasmin / 0.737
2wer RDCATP-dependent molecular chaperone HSP82 / 0.735
2xx2 13CATP-dependent molecular chaperone HSP82 / 0.725
1bgq RDCATP-dependent molecular chaperone HSP82 / 0.695
2xd6 XD6ATP-dependent molecular chaperone HSP82 / 0.692
2iws NP4ATP-dependent molecular chaperone HSP82 / 0.690
4b7p 9UNHeat shock protein HSP 90-alpha / 0.689
2gfd RDAEndoplasmin / 0.685
4bqj XKLHeat shock protein HSP 90-alpha / 0.677
3k97 4CDHeat shock protein HSP 90-alpha / 0.667
4egk RDCHeat shock protein HSP 90-alpha / 0.662
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2hkj RDCType 2 DNA topoisomerase 6 subunit B / 0.656
3inx JZCHeat shock protein HSP 90-alpha / 0.656