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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ce1 7FK ATP-dependent molecular chaperone HSP82

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ce1 7FKATP-dependent molecular chaperone HSP82 / 0.950
4ce2 BO5ATP-dependent molecular chaperone HSP82 / 0.870
2xx4 13IATP-dependent molecular chaperone HSP82 / 0.860
2xd6 XD6ATP-dependent molecular chaperone HSP82 / 0.858
2xx2 13CATP-dependent molecular chaperone HSP82 / 0.813
2gfd RDAEndoplasmin / 0.800
1u0z RDCEndoplasmin / 0.788
2iws NP4ATP-dependent molecular chaperone HSP82 / 0.782
2wer RDCATP-dependent molecular chaperone HSP82 / 0.781
4ce3 L4VATP-dependent molecular chaperone HSP82 / 0.778
2iwx M1SATP-dependent molecular chaperone HSP82 / 0.775
2iwu NP5ATP-dependent molecular chaperone HSP82 / 0.771
2hkj RDCType 2 DNA topoisomerase 6 subunit B / 0.770
1qy8 RDIEndoplasmin / 0.763
2cgf P2NATP-dependent molecular chaperone HSP82 / 0.761
2yi5 YI5Heat shock protein HSP 90-alpha / 0.758
4egk RDCHeat shock protein HSP 90-alpha / 0.755
4b7p 9UNHeat shock protein HSP 90-alpha / 0.753
3inw JZBHeat shock protein HSP 90-alpha / 0.750
2fxs RDAATP-dependent molecular chaperone HSP82 / 0.749
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1bgq RDCATP-dependent molecular chaperone HSP82 / 0.731
2brc CT5ATP-dependent molecular chaperone HSP82 / 0.718
2bre KJ2ATP-dependent molecular chaperone HSP82 / 0.711
2yjw YJWHeat shock protein HSP 90-alpha / 0.706
4e5l DBHPolymerase acidic protein / 0.672
3inx JZCHeat shock protein HSP 90-alpha / 0.671
3k99 PFTHeat shock protein HSP 90-alpha / 0.667
3hek BD0Heat shock protein HSP 90-alpha / 0.666
4e5f 0N7Polymerase acidic protein / 0.660