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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4bf1 9FK Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4bf1 9FKCarbonic anhydrase 2 4.2.1.1 0.845
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.759
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.758
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.750
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.742
3oys OYSCarbonic anhydrase 2 4.2.1.1 0.731
3oy0 OY0Carbonic anhydrase 2 4.2.1.1 0.730
1g4j FFBCarbonic anhydrase 2 4.2.1.1 0.728
1cny EG3Carbonic anhydrase 2 4.2.1.1 0.727
3mzc S6ICarbonic anhydrase 2 4.2.1.1 0.725
3s8x E59Carbonic anhydrase 2 4.2.1.1 0.725
1bn4 AL9Carbonic anhydrase 2 4.2.1.1 0.721
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.721
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.721
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.720
3n3j WWVCarbonic anhydrase 2 4.2.1.1 0.718
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.717
1cnx EG2Carbonic anhydrase 2 4.2.1.1 0.714
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.712
1bnu AL3Carbonic anhydrase 2 4.2.1.1 0.707
4itp 1GDCarbonic anhydrase 2 4.2.1.1 0.706
1bnq AL4Carbonic anhydrase 2 4.2.1.1 0.703
1i8z INLCarbonic anhydrase 2 4.2.1.1 0.702
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.702
1bnv AL7Carbonic anhydrase 2 4.2.1.1 0.697
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.696
3rz8 RZ8Carbonic anhydrase 2 4.2.1.1 0.692
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.690
3m5e JDRCarbonic anhydrase 2 4.2.1.1 0.690
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.690
4ilx 1EZCarbonic anhydrase 2 4.2.1.1 0.690
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.689
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.688
3qyk IE2Carbonic anhydrase 2 4.2.1.1 0.688
1g54 FFBCarbonic anhydrase 2 4.2.1.1 0.687
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.684
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.684
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.683
3dd8 2C7Carbonic anhydrase 2 4.2.1.1 0.680
1cnw EG1Carbonic anhydrase 2 4.2.1.1 0.678
4kp8 E1GCarbonic anhydrase 12 4.2.1.1 0.677
1dmy AZMCarbonic anhydrase 5A, mitochondrial 4.2.1.1 0.675
4k0z MZMCarbonic anhydrase 2 4.2.1.1 0.675
4xiw AZMCarbonic anhydrase, alpha type / 0.674
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.673
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.673
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.670
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.670
3d8w D8WCarbonic anhydrase 2 4.2.1.1 0.669
2eu3 FF3Carbonic anhydrase 2 4.2.1.1 0.664
1bnn AL1Carbonic anhydrase 2 4.2.1.1 0.663
1g45 FSBCarbonic anhydrase 2 4.2.1.1 0.663
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.663
3igp DT7Carbonic anhydrase 2 4.2.1.1 0.659
3k2f NKXCarbonic anhydrase 2 4.2.1.1 0.659
3mna DWHCarbonic anhydrase 2 4.2.1.1 0.659
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.658
3oim VZ5Carbonic anhydrase 2 4.2.1.1 0.654
3n4b WWZCarbonic anhydrase 2 4.2.1.1 0.653
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.652
1okn STBCarbonic anhydrase 2 4.2.1.1 0.651
3myq E27Carbonic anhydrase 2 4.2.1.1 0.651