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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3wrj CAM Camphor 5-monooxygenase 1.14.15.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3wrj CAMCamphor 5-monooxygenase 1.14.15.1 0.813
2zax CAMCamphor 5-monooxygenase 1.14.15.1 0.807
1dz4 CAMCamphor 5-monooxygenase 1.14.15.1 0.806
2zui CAMCamphor 5-monooxygenase 1.14.15.1 0.806
2m56 CAMCamphor 5-monooxygenase 1.14.15.1 0.804
1yrd CAMCamphor 5-monooxygenase 1.14.15.1 0.802
1yrc CAMCamphor 5-monooxygenase 1.14.15.1 0.792
3l63 CAMCamphor 5-monooxygenase 1.14.15.1 0.792
6cp4 CAMCamphor 5-monooxygenase 1.14.15.1 0.790
2feu CAMCamphor 5-monooxygenase 1.14.15.1 0.789
4ek1 CAMCamphor 5-monooxygenase 1.14.15.1 0.789
1noo CAHCamphor 5-monooxygenase 1.14.15.1 0.785
5cp4 CAMCamphor 5-monooxygenase 1.14.15.1 0.784
4l49 CAMCamphor 5-monooxygenase 1.14.15.1 0.780
1iwj CAMCamphor 5-monooxygenase 1.14.15.1 0.779
1t85 CAMCamphor 5-monooxygenase 1.14.15.1 0.779
2qbl CAMCamphor 5-monooxygenase 1.14.15.1 0.777
4g3r CAMCamphor 5-monooxygenase 1.14.15.1 0.772
1uyu CAMCamphor 5-monooxygenase 1.14.15.1 0.770
1iwi CAMCamphor 5-monooxygenase 1.14.15.1 0.763
2cpp CAMCamphor 5-monooxygenase 1.14.15.1 0.758
3cpp CAMCamphor 5-monooxygenase 1.14.15.1 0.746
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
2a1o CAMCamphor 5-monooxygenase 1.14.15.1 0.744
2puc GUNHTH-type transcriptional repressor PurR / 0.744
4e5l DBHPolymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
3fwj CAMCamphor 5-monooxygenase 1.14.15.1 0.731
1dz6 CAMCamphor 5-monooxygenase 1.14.15.1 0.728
2a1m CAMCamphor 5-monooxygenase 1.14.15.1 0.726
3wrl CAMCamphor 5-monooxygenase 1.14.15.1 0.713
3fwg CAMCamphor 5-monooxygenase 1.14.15.1 0.706
3wrm CAMCamphor 5-monooxygenase 1.14.15.1 0.705
4l4d CAMCamphor 5-monooxygenase 1.14.15.1 0.701
4l4c CAMCamphor 5-monooxygenase 1.14.15.1 0.698
1o76 CAMCamphor 5-monooxygenase 1.14.15.1 0.696
3fwi CAMCamphor 5-monooxygenase 1.14.15.1 0.696
3wrh CAMCamphor 5-monooxygenase 1.14.15.1 0.691
3fwf CAMCamphor 5-monooxygenase 1.14.15.1 0.690
1t86 CAMCamphor 5-monooxygenase 1.14.15.1 0.688
1t88 CAMCamphor 5-monooxygenase 1.14.15.1 0.686
1dz8 CAMCamphor 5-monooxygenase 1.14.15.1 0.681
3lxi CAMCytochrome P450 / 0.681
2a1n CAMCamphor 5-monooxygenase 1.14.15.1 0.672
2z97 CAMCamphor 5-monooxygenase 1.14.15.1 0.671
2qbo CAMCamphor 5-monooxygenase 1.14.15.1 0.667
4c9p CAMCytochrome P450 / 0.666
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4l4a CAMCamphor 5-monooxygenase 1.14.15.1 0.655
1geb CAMCamphor 5-monooxygenase 1.14.15.1 0.654
4l4e CAMCamphor 5-monooxygenase 1.14.15.1 0.654
4l4f CAMCamphor 5-monooxygenase 1.14.15.1 0.654
4l4b CAMCamphor 5-monooxygenase 1.14.15.1 0.650