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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3w5h FAD NADH-cytochrome b5 reductase 3 1.6.2.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 1.476
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 1.186
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 1.109
2eix FADNADH-cytochrome b5 reductase / 1.042
1cqx FADFlavohemoprotein / 1.023
3qfc FADNADPH--cytochrome P450 reductase / 0.990
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.982
3qe2 FADNADPH--cytochrome P450 reductase / 0.971
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.963
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.959
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.958
1ja1 FADNADPH--cytochrome P450 reductase / 0.958
3ojw FADNADPH--cytochrome P450 reductase / 0.957
2rc5 FADFerredoxin--NADP reductase / 0.953
3qfs FADNADPH--cytochrome P450 reductase / 0.943
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.933
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.931
3qft FADNADPH--cytochrome P450 reductase / 0.931
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.929
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.929
1gjr FADFerredoxin--NADP reductase 1.18.1.2 0.928
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.928
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.925
1amo FADNADPH--cytochrome P450 reductase / 0.924
3fpk FADFerredoxin-NADP reductase / 0.917
1w34 FADFerredoxin--NADP reductase 1.18.1.2 0.916
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.913
1que FADFerredoxin--NADP reductase 1.18.1.2 0.913
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.912
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.912
4c43 FADFerredoxin--NADP reductase 1.18.1.2 0.912
1w35 FADFerredoxin--NADP reductase 1.18.1.2 0.910
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.909
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.908
3vo2 FADFerredoxin--NADP reductase / 0.907
4y9r FADNADPH--cytochrome P450 reductase / 0.907
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.905
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.904
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.903
4y9u FADNADPH--cytochrome P450 reductase / 0.903
1b2r FADFerredoxin--NADP reductase 1.18.1.2 0.902
3zbt FADFerredoxin--NADP reductase 1.18.1.2 0.901
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.900
1e64 FADFerredoxin--NADP reductase 1.18.1.2 0.897
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.897
2vyq FADFerredoxin--NADP reductase 1.18.1.2 0.897
1gaw FADFerredoxin / 0.890
1qgz FADFerredoxin--NADP reductase 1.18.1.2 0.890
2rc6 FADFerredoxin--NADP reductase / 0.890
1ja0 FADNADPH--cytochrome P450 reductase / 0.888
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.887
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.886
1e62 FADFerredoxin--NADP reductase 1.18.1.2 0.883
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.882
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.882
3ojx FADNADPH--cytochrome P450 reductase / 0.882
4yaf FADNADPH--cytochrome P450 reductase / 0.882
4y7c FADNADPH--cytochrome P450 reductase / 0.878
4bpr FADFerredoxin--NADP reductase 1.18.1.2 0.876
4yau FADNADPH--cytochrome P450 reductase / 0.875
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.870
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 0.868
4fk8 FADFerredoxin--NADP reductase / 0.863
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.861
1gaq FADFerredoxin / 0.860
4yao FADNADPH--cytochrome P450 reductase / 0.860
1j9z FADNADPH--cytochrome P450 reductase / 0.859
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.857
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.850
3qfr FADNADPH--cytochrome P450 reductase / 0.842
2bf4 FADNADPH--cytochrome P450 reductase / 0.837
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.828
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.820
1tll FADNitric oxide synthase, brain 1.14.13.39 0.810
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.807
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.805
1ewy FADFerredoxin--NADP reductase 1.18.1.2 0.802
2bn4 FADNADPH--cytochrome P450 reductase / 0.800
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.800
3w5u FADFerredoxin / 0.800
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.794
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.791
3crz FADFerredoxin--NADP+ reductase / 0.777
1cnf FADNitrate reductase [NADH] 1.7.1.1 0.764
1gvh FADFlavohemoprotein / 0.763
1sm4 FADFerredoxin--NADP reductase / 0.763
2qdx FADFerredoxin--NADP+ reductase / 0.755
4k1x FADNADPH:ferredoxin reductase / 0.749
3r5z F42Uncharacterized protein / 0.735
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.734
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.730
2pia FMNPhthalate dioxygenase reductase / 0.730
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.728
2hq9 FADMll6688 protein / 0.726
2gpj FADSiderophore-interacting protein / 0.711
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.709
3in6 FMNUncharacterized protein / 0.700
5cho FADFlavin reductase / 0.698
2vnk FADNADPH:ferredoxin reductase / 0.695
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.695
2bgi FADNADPH:ferredoxin reductase / 0.688
5ahk FADAcetolactate synthase II, large subunit / 0.685
2bpo FADNADPH--cytochrome P450 reductase / 0.684
4hia FMNLOV protein / 0.683
5efw FMNNPH1-1 / 0.683
1cne FADNitrate reductase [NADH] 1.7.1.1 0.682
2vnj FADNADPH:ferredoxin reductase / 0.682
4f07 FADStyrene monooxygenase component 2 / 0.679
4hj4 FMNLOV protein / 0.675
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.671
4ees FMNPhototropin-2 2.7.11.1 0.671
3q9t FAYUncharacterized protein / 0.669
1eje FMNProtein MTH_152 / 0.668
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.664
4wf0 FMNNPH1-1 / 0.664
3t50 FMNBlue-light-activated histidine kinase 2.7.13.3 0.661
4b4d FADFerredoxin-NADP reductase / 0.659
1ju2 FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.658
1gzf NADMono-ADP-ribosyltransferase C3 2.4.2 0.657
1tj0 FADBifunctional protein PutA 1.5.5.2 0.655
3ept FDAPutative FAD-monooxygenase / 0.654
4rhe FMNFlavin prenyltransferase UbiX / 0.651