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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3vy2 FMN FMN-binding protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3vy2 FMNFMN-binding protein / 1.105
3a6q FMNFMN-binding protein / 1.084
3a6r FMNFMN-binding protein / 1.083
2e83 FMNFMN-binding protein / 1.047
3a20 FMNFMN-binding protein / 1.037
3vy5 FMNFMN-binding protein / 1.034
3awh FMNFMN-binding protein / 1.032
1wlk FMNFMN-binding protein / 1.031
1flm FMNFMN-binding protein / 1.028
3amf FMNFMN-binding protein / 1.026
1wli FMNFMN-binding protein / 1.006
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.735
3e4v FMNUncharacterized protein / 0.723
3qe2 FADNADPH--cytochrome P450 reductase / 0.703
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.701
2vnk FADNADPH:ferredoxin reductase / 0.697
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.696
2vnh FADNADPH:ferredoxin reductase / 0.695
3qfs FADNADPH--cytochrome P450 reductase / 0.693
4yau FADNADPH--cytochrome P450 reductase / 0.692
2ou5 FMNPyridoxamine 5'-phosphate oxidase-related FMN-binding protein / 0.690
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.686
2pia FMNPhthalate dioxygenase reductase / 0.686
4b4d FADFerredoxin-NADP reductase / 0.686
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.684
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.683
3qfc FADNADPH--cytochrome P450 reductase / 0.682
3r5y F42Uncharacterized protein / 0.682
2vnj FADNADPH:ferredoxin reductase / 0.681
1mok FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.680
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.678
1w35 FADFerredoxin--NADP reductase 1.18.1.2 0.678
4y9u FADNADPH--cytochrome P450 reductase / 0.678
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.677
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.677
4y7c FADNADPH--cytochrome P450 reductase / 0.677
2dji FADPyruvate oxidase / 0.676
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.675
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.675
2rc5 FADFerredoxin--NADP reductase / 0.675
3qfr FADNADPH--cytochrome P450 reductase / 0.674
2bgj FADNADPH:ferredoxin reductase / 0.673
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.673
2gpj FADSiderophore-interacting protein / 0.672
4y9r FADNADPH--cytochrome P450 reductase / 0.671
1gaw FADFerredoxin / 0.670
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.670
4fk8 FADFerredoxin--NADP reductase / 0.670
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.667
1w34 FADFerredoxin--NADP reductase 1.18.1.2 0.666
4hmx FMNPyridoxamine 5'-phosphate oxidase / 0.666
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.665
1v5e FADPyruvate oxidase / 0.665
2ptf FMNUncharacterized protein MTH_863 / 0.665
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.664
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.664
3fpk FADFerredoxin-NADP reductase / 0.664
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.663
4yao FADNADPH--cytochrome P450 reductase / 0.663
1cqx FADFlavohemoprotein / 0.662
1zy8 FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.662
2ed4 FAD4-hydroxyphenylacetate 3-monooxygenase reductase component 1.5.1.36 0.662
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.661
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.661
3zbt FADFerredoxin--NADP reductase 1.18.1.2 0.661
1ci0 FMNPyridoxamine 5'-phosphate oxidase 1.4.3.5 0.659
1icu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.659
3crz FADFerredoxin--NADP+ reductase / 0.659
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.659
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.658
3r5z F42Uncharacterized protein / 0.658
3w5u FADFerredoxin / 0.658
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.658
2bf4 FADNADPH--cytochrome P450 reductase / 0.656
2bn4 FADNADPH--cytochrome P450 reductase / 0.656
2hq9 FADMll6688 protein / 0.656
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.656
1vfr FMNMajor NAD(P)H-flavin oxidoreductase 1.6.99 0.655
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.655
2vyq FADFerredoxin--NADP reductase 1.18.1.2 0.655
1wv4 FMNPyridoxine/pyridoxamine 5'-phosphate oxidase / 0.654
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.654
4hmw FMNPyridoxamine 5'-phosphate oxidase / 0.654
4ybn FADFlavin-nucleotide-binding protein / 0.654
5cho FADFlavin reductase / 0.654
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.653
1qgz FADFerredoxin--NADP reductase 1.18.1.2 0.652
1usc FMNMonooxygenase / 0.651
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.651
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.650