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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3rni 21Z Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3rni 21ZCyclin-dependent kinase 2 2.7.11.22 0.944
3s1h 56ZCyclin-dependent kinase 2 2.7.11.22 0.869
3rk7 08ZCyclin-dependent kinase 2 2.7.11.22 0.844
3sqq 99ZCyclin-dependent kinase 2 2.7.11.22 0.833
3rak 03ZCyclin-dependent kinase 2 2.7.11.22 0.821
3rjc 06ZCyclin-dependent kinase 2 2.7.11.22 0.803
3o0g 3O0Cyclin-dependent-like kinase 5 2.7.11.1 0.797
3qtx X43Cyclin-dependent kinase 2 2.7.11.22 0.789
3qtr X36Cyclin-dependent kinase 2 2.7.11.22 0.780
3qxp X64Cyclin-dependent kinase 2 2.7.11.22 0.780
3rk5 07ZCyclin-dependent kinase 2 2.7.11.22 0.780
3rmf 20ZCyclin-dependent kinase 2 2.7.11.22 0.774
3ral 04ZCyclin-dependent kinase 2 2.7.11.22 0.772
3rk9 09ZCyclin-dependent kinase 2 2.7.11.22 0.767
3qqk X02Cyclin-dependent kinase 2 2.7.11.22 0.766
3qtw X3ACyclin-dependent kinase 2 2.7.11.22 0.766
3rkb 12ZCyclin-dependent kinase 2 2.7.11.22 0.764
3rpv 26ZCyclin-dependent kinase 2 2.7.11.22 0.762
3rpy 27ZCyclin-dependent kinase 2 2.7.11.22 0.756
3r9h Z67Cyclin-dependent kinase 2 2.7.11.22 0.754
3qtz X42Cyclin-dependent kinase 2 2.7.11.22 0.751
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3qtu X44Cyclin-dependent kinase 2 2.7.11.22 0.744
3r8z Z63Cyclin-dependent kinase 2 2.7.11.22 0.728
3rzb 02ZCyclin-dependent kinase 2 2.7.11.22 0.728
3r9d X6BCyclin-dependent kinase 2 2.7.11.22 0.723
3s0o 50ZCyclin-dependent kinase 2 2.7.11.22 0.718
3qtq X35Cyclin-dependent kinase 2 2.7.11.22 0.713
3r8v Z62Cyclin-dependent kinase 2 2.7.11.22 0.702
5dr6 SKEAurora kinase A 2.7.11.1 0.694
2jko BIJFocal adhesion kinase 1 2.7.10.2 0.692
3rpr 25ZCyclin-dependent kinase 2 2.7.11.22 0.678
3ama SKEcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.677
2vto LZ8Cyclin-dependent kinase 2 2.7.11.22 0.675
1w8c N69Cyclin-dependent kinase 2 2.7.11.22 0.670
3r9o Z71Cyclin-dependent kinase 2 2.7.11.22 0.668
1pxj CK2Cyclin-dependent kinase 2 2.7.11.22 0.663
5dt0 SKEAurora kinase A 2.7.11.1 0.663
1v1k 3FPCyclin-dependent kinase 2 2.7.11.22 0.662
2wms ZYSSerine/threonine-protein kinase Chk1 2.7.11.1 0.662
4e5f 0N7Polymerase acidic protein / 0.660
2iw6 QQ2Cyclin-dependent kinase 2 2.7.11.22 0.659
2vtq LZACyclin-dependent kinase 2 2.7.11.22 0.659
1ogu ST8Cyclin-dependent kinase 2 2.7.11.22 0.658
1oit HDTCyclin-dependent kinase 2 2.7.11.22 0.657
2vtn LZ7Cyclin-dependent kinase 2 2.7.11.22 0.655
2w17 I19Cyclin-dependent kinase 2 2.7.11.22 0.655
4fkl CK2Cyclin-dependent kinase 2 2.7.11.22 0.654
2w1h L0FCyclin-dependent kinase 2 2.7.11.22 0.651
2vtt LZDCyclin-dependent kinase 2 2.7.11.22 0.650