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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Protein Data Bank Entry:

2jko

1.650 Å

X-ray

2008-08-28

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:Focal adhesion kinase 1
ID:FAK1_CHICK
AC:Q00944
Organism:Gallus gallus
Reign:Eukaryota
TaxID:9031
EC Number:2.7.10.2


Chains:

Chain Name:Percentage of Residues
within binding site
A100 %


Ligand binding site composition:

B-Factor:28.099
Number of residues:32
Including
Standard Amino Acids: 32
Non Standard Amino Acids: 0
Water Molecules: 0
Cofactors:
Metals:

Cavity properties

LigandabilityVolume (Å3)
1.299472.500

% Hydrophobic% Polar
60.0040.00
According to VolSite

Ligand :
2jko_1 Structure
HET Code: BIJ
Formula: C25H31ClN7O2
Molecular weight: 497.012 g/mol
DrugBank ID: -
Buried Surface Area:57.29 %
Polar Surface area: 89.55 Å2
Number of
H-Bond Acceptors: 4
H-Bond Donors: 4
Rings: 5
Aromatic rings: 2
Anionic atoms: 0
Cationic atoms: 3
Rule of Five Violation: 0
Rotatable Bonds: 5

Mass center Coordinates

XYZ
28.804323.735935.7015


Binding mode :
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Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
CBDCBILE- 4284.270Hydrophobic
CASCG2ILE- 4283.680Hydrophobic
CALCD1ILE- 4283.590Hydrophobic
CAWCBILE- 4283.530Hydrophobic
C5CBALA- 4523.880Hydrophobic
CL5CBMET- 4993.910Hydrophobic
CASCD1LEU- 5014.320Hydrophobic
NAHOCYS- 5022.79151.93H-Bond
(Ligand Donor)
N1NCYS- 5022.92168.89H-Bond
(Protein Donor)
CAVCGGLU- 5064.30Hydrophobic
CBBCGGLU- 5063.950Hydrophobic
CAPCD2LEU- 5534.080Hydrophobic
C5CD1LEU- 5533.430Hydrophobic
CANCD2LEU- 5533.850Hydrophobic
CL5CBASP- 5644.480Hydrophobic
OAINASP- 5643.17144.84H-Bond
(Protein Donor)
CL5CD1LEU- 5674.450Hydrophobic
CANCD1LEU- 5673.70Hydrophobic