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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3qfr FMN NADPH--cytochrome P450 reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3qfr FMNNADPH--cytochrome P450 reductase / 1.215
3qe2 FMNNADPH--cytochrome P450 reductase / 1.116
1amo FMNNADPH--cytochrome P450 reductase / 1.069
3ojx FMNNADPH--cytochrome P450 reductase / 1.046
3ojw FMNNADPH--cytochrome P450 reductase / 1.000
2bf4 FMNNADPH--cytochrome P450 reductase / 0.980
4yao FMNNADPH--cytochrome P450 reductase / 0.961
1ja0 FMNNADPH--cytochrome P450 reductase / 0.906
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.888
4y7c FMNNADPH--cytochrome P450 reductase / 0.878
4oxx FMNCindoxin / 0.867
2bn4 FMNNADPH--cytochrome P450 reductase / 0.858
1j9z FMNNADPH--cytochrome P450 reductase / 0.839
1ja1 FMNNADPH--cytochrome P450 reductase / 0.834
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.802
1czn FMNFlavodoxin / 0.788
1fue FMNFlavodoxin / 0.788
3n39 FMNProtein NrdI / 0.786
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.786
3n3a FMNProtein NrdI / 0.773
2v5u FMNFlavodoxin / 0.759
1yob FMNFlavodoxin 2 / 0.756
1wsb FMNFlavodoxin / 0.751
2fcr FMNFlavodoxin / 0.747
1ahn FMNFlavodoxin 1 / 0.745
1ofv FMNFlavodoxin / 0.745
2w5u FMNFlavodoxin / 0.739
1xyv FMNFlavodoxin / 0.738
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.738
1j8q FMNFlavodoxin / 0.737
3esz FMNFlavodoxin / 0.735
4bmp FMNProtein NrdI / 0.727
1c7f FMNFlavodoxin / 0.726
3f6s FMNFlavodoxin / 0.725
1fx1 FMNFlavodoxin / 0.720
1ych FMNNitric oxide reductase 1 0.719
2fx2 FMNFlavodoxin / 0.718
3n3b FMNProtein NrdI / 0.715
4fx2 FMNFlavodoxin / 0.715
1azl FMNFlavodoxin / 0.713
2ohh FMNType A flavoprotein FprA 1 0.713
1akr FMNFlavodoxin / 0.709
1akw FMNFlavodoxin / 0.709
1ycf FMNNitric oxide reductase 1 0.708
4bmo FMNProtein NrdI / 0.707
2q9u FMNA-type flavoprotein / 0.701
1aku FMNFlavodoxin / 0.700
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.700
5tgz FMNCannabinoid receptor 1 / 0.700
1bu5 RBFFlavodoxin / 0.696
2ohj FMNType A flavoprotein FprA 1 0.696
1vcf FMNIsopentenyl-diphosphate delta-isomerase / 0.692
4zvn FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.690
2mok FMNFlavodoxin 1 / 0.689
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.689
2mt9 FMNFlavodoxin 2 / 0.686
2v5v FMNFlavodoxin / 0.686
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.685
4n9q FMNFMN-dependent NADH-azoreductase 1 / 0.682
1t5b FMNFMN-dependent NADH-azoreductase / 0.681
1xyy FMNFlavodoxin / 0.681
4zvl FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.681
4hs4 FMNChromate reductase / 0.679
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.679
2gou FMNNADH:flavin oxidoreductase Sye1 / 0.677
4j8p FMNFlavodoxin / 0.676
1ics FMN12-oxophytodienoate reductase 1 1.3.1.42 0.675
2gqa FMNNADH:flavin oxidoreductase Sye1 / 0.675
2ohi FMNType A flavoprotein FprA 1 0.675
3g5m FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.674
1ycg FMNNitric oxide reductase 1 0.673
3hgr FMN12-oxophytodienoate reductase 1 1.3.1.42 0.670
1j9g FMNFlavodoxin / 0.669
1z41 FMNNADPH dehydrogenase / 0.668
4n65 FMNFMN-dependent NADH-azoreductase 1 / 0.667
5xr8 FMNCannabinoid receptor 1 / 0.667
2h8x FMNXenA / 0.665
2reh FADNitroalkane oxidase 1.7.3.1 0.665
3b04 OOPIsopentenyl-diphosphate delta-isomerase / 0.665
3f6r FMNFlavodoxin / 0.665
2isk FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.664
3f90 FMNFlavodoxin / 0.664
3w8w FADPutative FAD-dependent oxygenase EncM / 0.664
2z6i FMN2-nitropropane dioxygenase / 0.661
4tmb FMNOld yellow enzyme / 0.661
1q45 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.660
3esy FMNFlavodoxin / 0.659
3kap FMNFlavodoxin / 0.659
4awt FMNNADH:flavin oxidoreductase Sye1 / 0.659
2zfa FMNLactate oxidase / 0.658
4qoe FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.658
2djl FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.657
1icp FMN12-oxophytodienoate reductase 1 1.3.1.42 0.656
1z44 FMNNADPH dehydrogenase / 0.656
4aws FMNNADH:flavin oxidoreductase Sye1 / 0.656
1udy FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.654
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.654
1h50 FMNPentaerythritol tetranitrate reductase / 0.653
1icq FMN12-oxophytodienoate reductase 1 1.3.1.42 0.653
2vxa RBFDodecin / 0.653
3klb FMNUncharacterized protein / 0.653
4ef8 FMNDihydroorotate dehydrogenase (fumarate) / 0.650