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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3mzc S6I Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3mzc S6ICarbonic anhydrase 2 4.2.1.1 0.901
3n3j WWVCarbonic anhydrase 2 4.2.1.1 0.848
3oys OYSCarbonic anhydrase 2 4.2.1.1 0.845
3oy0 OY0Carbonic anhydrase 2 4.2.1.1 0.830
4ilx 1EZCarbonic anhydrase 2 4.2.1.1 0.821
3n4b WWZCarbonic anhydrase 2 4.2.1.1 0.804
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.794
1i9q IOFCarbonic anhydrase 2 4.2.1.1 0.766
3ml2 SU0Carbonic anhydrase 2 4.2.1.1 0.766
3n0n P9BCarbonic anhydrase 2 4.2.1.1 0.764
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.760
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.759
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.759
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.758
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.757
1g4j FFBCarbonic anhydrase 2 4.2.1.1 0.756
1g45 FSBCarbonic anhydrase 2 4.2.1.1 0.754
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.752
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.749
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.749
3s8x E59Carbonic anhydrase 2 4.2.1.1 0.749
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.746
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3qyk IE2Carbonic anhydrase 2 4.2.1.1 0.744
2q1q OSPCarbonic anhydrase 2 4.2.1.1 0.743
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.742
1if7 SBRCarbonic anhydrase 2 4.2.1.1 0.741
1if6 FBUCarbonic anhydrase 2 4.2.1.1 0.739
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.734
4kp8 E1GCarbonic anhydrase 12 4.2.1.1 0.734
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.732
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.731
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.730
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.728
3oim VZ5Carbonic anhydrase 2 4.2.1.1 0.727
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.726
1i8z INLCarbonic anhydrase 2 4.2.1.1 0.725
4bf1 9FKCarbonic anhydrase 2 4.2.1.1 0.725
1kwr SG2Carbonic anhydrase 2 4.2.1.1 0.722
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.720
1bnn AL1Carbonic anhydrase 2 4.2.1.1 0.718
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.717
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.716
1bn1 AL5Carbonic anhydrase 2 4.2.1.1 0.715
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.714
1bn4 AL9Carbonic anhydrase 2 4.2.1.1 0.713
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.713
3mhl J71Carbonic anhydrase 2 4.2.1.1 0.713
1bnv AL7Carbonic anhydrase 2 4.2.1.1 0.710
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.705
1cnx EG2Carbonic anhydrase 2 4.2.1.1 0.702
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.701
1bnq AL4Carbonic anhydrase 2 4.2.1.1 0.700
3bet CTFCarbonic anhydrase 2 4.2.1.1 0.699
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.697
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.694
1a42 BZUCarbonic anhydrase 2 4.2.1.1 0.693
1i9p IOECarbonic anhydrase 2 4.2.1.1 0.691
3igp DT7Carbonic anhydrase 2 4.2.1.1 0.691
3mna DWHCarbonic anhydrase 2 4.2.1.1 0.687
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.685
3da2 4MDCarbonic anhydrase 13 4.2.1.1 0.683
3k2f NKXCarbonic anhydrase 2 4.2.1.1 0.683
4ht2 V50Carbonic anhydrase 12 4.2.1.1 0.683
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.681
1if5 FBTCarbonic anhydrase 2 4.2.1.1 0.678
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.674
1eou SMSCarbonic anhydrase 2 4.2.1.1 0.673
1xpz 4TZCarbonic anhydrase 2 4.2.1.1 0.672
3dd8 2C7Carbonic anhydrase 2 4.2.1.1 0.671
2eu3 FF3Carbonic anhydrase 2 4.2.1.1 0.669
3lxe TORCarbonic anhydrase 1 4.2.1.1 0.668
1i9n IOACarbonic anhydrase 2 4.2.1.1 0.667
3ni5 C1HCarbonic anhydrase 2 4.2.1.1 0.667
1dmy AZMCarbonic anhydrase 5A, mitochondrial 4.2.1.1 0.666
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.665
3hku TORCarbonic anhydrase 2 4.2.1.1 0.663
2h15 B19Carbonic anhydrase 2 4.2.1.1 0.662
3daz MZMCarbonic anhydrase 2 4.2.1.1 0.660
4uov AZMCarbonate dehydratase / 0.659
1bnu AL3Carbonic anhydrase 2 4.2.1.1 0.658
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.657
1xq0 4TRCarbonic anhydrase 2 4.2.1.1 0.654