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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ml2 SU0 Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ml2 SU0Carbonic anhydrase 2 4.2.1.1 0.835
3qyk IE2Carbonic anhydrase 2 4.2.1.1 0.797
3oy0 OY0Carbonic anhydrase 2 4.2.1.1 0.788
3n0n P9BCarbonic anhydrase 2 4.2.1.1 0.781
3n3j WWVCarbonic anhydrase 2 4.2.1.1 0.781
3oys OYSCarbonic anhydrase 2 4.2.1.1 0.780
3n4b WWZCarbonic anhydrase 2 4.2.1.1 0.775
1g45 FSBCarbonic anhydrase 2 4.2.1.1 0.769
3m2n J74Carbonic anhydrase 2 4.2.1.1 0.767
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.767
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.766
3mzc S6ICarbonic anhydrase 2 4.2.1.1 0.766
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.765
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.764
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.764
4ilx 1EZCarbonic anhydrase 2 4.2.1.1 0.764
1g4j FFBCarbonic anhydrase 2 4.2.1.1 0.763
2q1q OSPCarbonic anhydrase 2 4.2.1.1 0.763
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.762
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.756
3mhl J71Carbonic anhydrase 2 4.2.1.1 0.756
1i9q IOFCarbonic anhydrase 2 4.2.1.1 0.754
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.754
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.754
3s8x E59Carbonic anhydrase 2 4.2.1.1 0.753
3mho J43Carbonic anhydrase 2 4.2.1.1 0.752
1okm SABCarbonic anhydrase 2 4.2.1.1 0.751
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.750
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.748
1kwr SG2Carbonic anhydrase 2 4.2.1.1 0.747
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.745
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.745
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.744
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.744
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.743
1if8 SBSCarbonic anhydrase 2 4.2.1.1 0.738
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.734
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.734
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.734
1cnx EG2Carbonic anhydrase 2 4.2.1.1 0.733
1if7 SBRCarbonic anhydrase 2 4.2.1.1 0.732
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.725
4dz7 D02Carbonic anhydrase 2 4.2.1.1 0.723
2eu3 FF3Carbonic anhydrase 2 4.2.1.1 0.722
4k0z MZMCarbonic anhydrase 2 4.2.1.1 0.722
3dcs MZMCarbonic anhydrase 2 4.2.1.1 0.720
3m5e JDRCarbonic anhydrase 2 4.2.1.1 0.719
1if5 FBTCarbonic anhydrase 2 4.2.1.1 0.717
2nmx M25Carbonic anhydrase 1 4.2.1.1 0.715
4ht2 V50Carbonic anhydrase 12 4.2.1.1 0.714
1dmy AZMCarbonic anhydrase 5A, mitochondrial 4.2.1.1 0.712
3igp DT7Carbonic anhydrase 2 4.2.1.1 0.710
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.709
4kap 1QVCarbonic anhydrase 2 4.2.1.1 0.707
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.700
3f4x KLTCarbonic anhydrase 2 4.2.1.1 0.697
1bzm MZMCarbonic anhydrase 1 4.2.1.1 0.696
3daz MZMCarbonic anhydrase 2 4.2.1.1 0.696
1i8z INLCarbonic anhydrase 2 4.2.1.1 0.694
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.694
3lxe TORCarbonic anhydrase 1 4.2.1.1 0.691
1xpz 4TZCarbonic anhydrase 2 4.2.1.1 0.687
4kp8 E1GCarbonic anhydrase 12 4.2.1.1 0.686
1if6 FBUCarbonic anhydrase 2 4.2.1.1 0.684
4kni E1ECarbonic anhydrase 2 4.2.1.1 0.680
4uov AZMCarbonate dehydratase / 0.680
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.679
1bnv AL7Carbonic anhydrase 2 4.2.1.1 0.676
3dd8 2C7Carbonic anhydrase 2 4.2.1.1 0.676
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.675
1eou SMSCarbonic anhydrase 2 4.2.1.1 0.674
1cnw EG1Carbonic anhydrase 2 4.2.1.1 0.672
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.670
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.669
3n2p AYXCarbonic anhydrase 2 4.2.1.1 0.668
4itp 1GDCarbonic anhydrase 2 4.2.1.1 0.668
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.666
3mhc ARZCarbonic anhydrase 2 4.2.1.1 0.666
3myq E27Carbonic anhydrase 2 4.2.1.1 0.666
1xq0 4TRCarbonic anhydrase 2 4.2.1.1 0.664
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.664
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.664
4xiw AZMCarbonic anhydrase, alpha type / 0.664
3da2 4MDCarbonic anhydrase 13 4.2.1.1 0.660
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.659
1i9n IOACarbonic anhydrase 2 4.2.1.1 0.658
1vhz APRADP compounds hydrolase NudE 3.6.1 0.656
3m2y BE0Carbonic anhydrase 2 4.2.1.1 0.656
3rz8 RZ8Carbonic anhydrase 2 4.2.1.1 0.656
1bnm AL8Carbonic anhydrase 2 4.2.1.1 0.654
1okn STBCarbonic anhydrase 2 4.2.1.1 0.654
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.654
2nn7 M29Carbonic anhydrase 1 4.2.1.1 0.653
1bnn AL1Carbonic anhydrase 2 4.2.1.1 0.652
3po6 DT9Carbonic anhydrase 2 4.2.1.1 0.651