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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3maa FKP Adenylate cyclase type 2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3maa FKPAdenylate cyclase type 2 / 0.950
3maa FKPAdenylate cyclase type 5 / 0.950
1cul FOKAdenylate cyclase type 2 / 0.873
1cul FOKAdenylate cyclase type 5 / 0.873
1cjv FOKAdenylate cyclase type 2 / 0.871
1cjv FOKAdenylate cyclase type 5 / 0.871
1cjt FOKAdenylate cyclase type 2 / 0.860
1cjt FOKAdenylate cyclase type 5 / 0.860
1cju FOKAdenylate cyclase type 2 / 0.860
1cju FOKAdenylate cyclase type 5 / 0.860
1u0h FOKAdenylate cyclase type 2 / 0.853
1u0h FOKAdenylate cyclase type 5 / 0.853
1cjk FOKAdenylate cyclase type 2 / 0.831
1cjk FOKAdenylate cyclase type 5 / 0.831
1cs4 FOKAdenylate cyclase type 2 / 0.826
1cs4 FOKAdenylate cyclase type 5 / 0.826
3c16 FOKAdenylate cyclase type 2 / 0.799
3c16 FOKAdenylate cyclase type 5 / 0.799
3c15 FOKAdenylate cyclase type 2 / 0.795
3c15 FOKAdenylate cyclase type 5 / 0.795
1tl7 FOKAdenylate cyclase type 2 / 0.791
1tl7 FOKAdenylate cyclase type 5 / 0.791
2gvd FKPAdenylate cyclase type 2 / 0.782
2gvd FKPAdenylate cyclase type 5 / 0.782
3c14 FOKAdenylate cyclase type 2 / 0.749
3c14 FOKAdenylate cyclase type 5 / 0.749
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4e5f 0N7Polymerase acidic protein / 0.660