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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Protein Data Bank Entry:

1cjt

2.800 Å

X-ray

1999-04-16

Molecular Function:
Binding Site :

Uniprot Annotation

Name:Adenylate cyclase type 2Adenylate cyclase type 5
ID:ADCY2_RATADCY5_CANLF
AC:P26769P30803
Organism:Rattus norvegicusCanis lupus familiaris
Reign:Eukaryota
TaxID:101169615
EC Number:/


Chains:

Chain Name:Percentage of Residues
within binding site
A54 %
B46 %


Ligand binding site composition:

B-Factor:27.984
Number of residues:30
Including
Standard Amino Acids: 29
Non Standard Amino Acids: 0
Water Molecules: 1
Cofactors:
Metals:

Cavity properties

LigandabilityVolume (Å3)
1.042648.000

% Hydrophobic% Polar
45.3154.69
According to VolSite

Ligand :
1cjt_1 Structure
HET Code: FOK
Formula: C22H34O7
Molecular weight: 410.501 g/mol
DrugBank ID: DB02587
Buried Surface Area:62.67 %
Polar Surface area: 113.29 Å2
Number of
H-Bond Acceptors: 7
H-Bond Donors: 3
Rings: 3
Aromatic rings: 0
Anionic atoms: 0
Cationic atoms: 0
Rule of Five Violation: 0
Rotatable Bonds: 3

Mass center Coordinates

XYZ
43.0953-11.105650.2358


Binding mode :
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Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
C19CE2PHE- 3943.980Hydrophobic
C2CZPHE- 3943.550Hydrophobic
C18CD1LEU- 4383.710Hydrophobic
C2CE2TYR- 4434.220Hydrophobic
C3CZTYR- 44340Hydrophobic
O2OVAL- 5062.65173.83H-Bond
(Ligand Donor)
C12CBTRP- 5073.980Hydrophobic
O7NSER- 5083.48173.13H-Bond
(Protein Donor)
C20CG1VAL- 5114.430Hydrophobic
C1CG1VAL- 5113.680Hydrophobic
C17CG2THR- 5124.040Hydrophobic
C20CBTHR- 5124.340Hydrophobic
C19CBASN- 5154.240Hydrophobic
C20CBASN- 5154.380Hydrophobic
C16CGLYS- 8964.360Hydrophobic
C16CD2TYR- 8993.910Hydrophobic
C18CG2ILE- 9403.520Hydrophobic
O5NSER- 9423.08167.97H-Bond
(Protein Donor)