Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3lxi CAM Cytochrome P450

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3lxi CAMCytochrome P450 / 0.810
4c9p CAMCytochrome P450 / 0.753
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
2puc GUNHTH-type transcriptional repressor PurR / 0.744
4e5l DBHPolymerase acidic protein / 0.744
1t88 CAMCamphor 5-monooxygenase 1.14.15.1 0.701
1iwi CAMCamphor 5-monooxygenase 1.14.15.1 0.700
1noo CAHCamphor 5-monooxygenase 1.14.15.1 0.699
1dz4 CAMCamphor 5-monooxygenase 1.14.15.1 0.698
6cp4 CAMCamphor 5-monooxygenase 1.14.15.1 0.698
1iwj CAMCamphor 5-monooxygenase 1.14.15.1 0.697
1o76 CAMCamphor 5-monooxygenase 1.14.15.1 0.696
3fwj CAMCamphor 5-monooxygenase 1.14.15.1 0.691
1t86 CAMCamphor 5-monooxygenase 1.14.15.1 0.690
4c9o CAMCytochrome P450 / 0.686
2a1n CAMCamphor 5-monooxygenase 1.14.15.1 0.685
1uyu CAMCamphor 5-monooxygenase 1.14.15.1 0.684
2qbn CAMCamphor 5-monooxygenase 1.14.15.1 0.684
1t85 CAMCamphor 5-monooxygenase 1.14.15.1 0.683
3cpp CAMCamphor 5-monooxygenase 1.14.15.1 0.682
4l49 CAMCamphor 5-monooxygenase 1.14.15.1 0.682
3wrj CAMCamphor 5-monooxygenase 1.14.15.1 0.681
1t87 CAMCamphor 5-monooxygenase 1.14.15.1 0.680
4l4d CAMCamphor 5-monooxygenase 1.14.15.1 0.679
2zax CAMCamphor 5-monooxygenase 1.14.15.1 0.677
2m56 CAMCamphor 5-monooxygenase 1.14.15.1 0.676
2zui CAMCamphor 5-monooxygenase 1.14.15.1 0.676
1yrc CAMCamphor 5-monooxygenase 1.14.15.1 0.666
2qbo CAMCamphor 5-monooxygenase 1.14.15.1 0.666
1yrd CAMCamphor 5-monooxygenase 1.14.15.1 0.665
2a1o CAMCamphor 5-monooxygenase 1.14.15.1 0.665
5cp4 CAMCamphor 5-monooxygenase 1.14.15.1 0.663
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1dz8 CAMCamphor 5-monooxygenase 1.14.15.1 0.659
3fwg CAMCamphor 5-monooxygenase 1.14.15.1 0.652
4l4f CAMCamphor 5-monooxygenase 1.14.15.1 0.650