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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3lxe TOR Carbonic anhydrase 1 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3lxe TORCarbonic anhydrase 1 4.2.1.1 0.856
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3hku TORCarbonic anhydrase 2 4.2.1.1 0.692
2h15 B19Carbonic anhydrase 2 4.2.1.1 0.691
3ml2 SU0Carbonic anhydrase 2 4.2.1.1 0.691
1if6 FBUCarbonic anhydrase 2 4.2.1.1 0.688
2eu3 FF3Carbonic anhydrase 2 4.2.1.1 0.688
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.685
4uov AZMCarbonate dehydratase / 0.679
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.678
1if7 SBRCarbonic anhydrase 2 4.2.1.1 0.677
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.677
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.676
1okm SABCarbonic anhydrase 2 4.2.1.1 0.676
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.676
2nmx M25Carbonic anhydrase 1 4.2.1.1 0.675
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.673
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.673
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.673
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.671
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.671
2q1q OSPCarbonic anhydrase 2 4.2.1.1 0.670
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.670
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.669
1i9n IOACarbonic anhydrase 2 4.2.1.1 0.668
3mzc S6ICarbonic anhydrase 2 4.2.1.1 0.668
3n3j WWVCarbonic anhydrase 2 4.2.1.1 0.667
1g4j FFBCarbonic anhydrase 2 4.2.1.1 0.666
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.665
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.665
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.664
4xiw AZMCarbonic anhydrase, alpha type / 0.664
3oy0 OY0Carbonic anhydrase 2 4.2.1.1 0.663
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.662
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.662
3n4b WWZCarbonic anhydrase 2 4.2.1.1 0.662
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.661
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.661
1kwr SG2Carbonic anhydrase 2 4.2.1.1 0.660
3f7b AG5Carbonic anhydrase 4 4.2.1.1 0.660
1g45 FSBCarbonic anhydrase 2 4.2.1.1 0.659
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.658
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.657
4itp 1GDCarbonic anhydrase 2 4.2.1.1 0.657
3eft 3BSCarbonic anhydrase 2 4.2.1.1 0.656
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.656
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.655
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.655
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.653
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.652
3d8w D8WCarbonic anhydrase 2 4.2.1.1 0.651
3oys OYSCarbonic anhydrase 2 4.2.1.1 0.650