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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3k97 4CD Heat shock protein HSP 90-alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3k97 4CDHeat shock protein HSP 90-alpha / 0.985
3ekr PY9Heat shock protein HSP 90-alpha / 0.885
3k98 1RCHeat shock protein HSP 90-alpha / 0.846
3hek BD0Heat shock protein HSP 90-alpha / 0.800
2xjj L81Heat shock protein HSP 90-alpha / 0.799
2xab VHDHeat shock protein HSP 90-alpha / 0.793
2xjx XJXHeat shock protein HSP 90-alpha / 0.792
2bt0 CT5Heat shock protein HSP 90-alpha / 0.789
3k99 PFTHeat shock protein HSP 90-alpha / 0.781
1u0z RDCEndoplasmin / 0.765
2vci 2GJHeat shock protein HSP 90-alpha / 0.765
2xx2 13CATP-dependent molecular chaperone HSP82 / 0.761
2yi7 BZ8Heat shock protein HSP 90-alpha / 0.760
3hhu 819Heat shock protein HSP 90-alpha / 0.758
1qy8 RDIEndoplasmin / 0.754
3eko PYUHeat shock protein HSP 90-alpha / 0.754
4egk RDCHeat shock protein HSP 90-alpha / 0.754
2bsm BSMHeat shock protein HSP 90-alpha / 0.753
2yjw YJWHeat shock protein HSP 90-alpha / 0.753
2ye9 2D4Heat shock protein HSP 90-alpha / 0.750
2vcj 2EQHeat shock protein HSP 90-alpha / 0.748
1yc4 43PHeat shock protein HSP 90-alpha / 0.747
2ccu 2D9Heat shock protein HSP 90-alpha / 0.747
1yc1 4BCHeat shock protein HSP 90-alpha / 0.745
2cct 2E1Heat shock protein HSP 90-alpha / 0.745
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2xht C0YHeat shock protein HSP 90-alpha / 0.743
4egh 0OYHeat shock protein HSP 90-alpha / 0.743
2xd6 XD6ATP-dependent molecular chaperone HSP82 / 0.731
2xjg XJGHeat shock protein HSP 90-alpha / 0.730
2yk2 YJWHeat shock protein HSP 90-alpha / 0.730
4bqj XKLHeat shock protein HSP 90-alpha / 0.729
2bre KJ2ATP-dependent molecular chaperone HSP82 / 0.718
2xx4 13IATP-dependent molecular chaperone HSP82 / 0.716
2ye4 2FYHeat shock protein HSP 90-alpha / 0.714
2byh 2D7Heat shock protein HSP 90-alpha / 0.713
4mp7 PFT[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial 2.7.11.2 0.713
2uwd 2GGHeat shock protein HSP 90-alpha / 0.711
2xx5 13NATP-dependent molecular chaperone HSP82 / 0.710
2bz5 AB4Heat shock protein HSP 90-alpha / 0.691
2fyp RDEEndoplasmin / 0.683
2wer RDCATP-dependent molecular chaperone HSP82 / 0.675
4mp2 PV1[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial 2.7.11.2 0.673
4e5l DBHPolymerase acidic protein / 0.672
2iws NP4ATP-dependent molecular chaperone HSP82 / 0.670
2yi6 6QMHeat shock protein HSP 90-alpha / 0.670
1bgq RDCATP-dependent molecular chaperone HSP82 / 0.669
4b7p 9UNHeat shock protein HSP 90-alpha / 0.669
4ce3 L4VATP-dependent molecular chaperone HSP82 / 0.667
4e5f 0N7Polymerase acidic protein / 0.660
2byi 2DDHeat shock protein HSP 90-alpha / 0.653
4ce2 BO5ATP-dependent molecular chaperone HSP82 / 0.653
2yec XQ0Heat shock protein HSP 90-alpha / 0.650