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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3jqr FAD Ferredoxin--NADP reductase, apicoplast

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3jqr FADFerredoxin--NADP reductase, apicoplast / 1.364
2ok8 FADFerredoxin--NADP reductase, apicoplast / 1.085
2ok7 FADFerredoxin--NADP reductase, apicoplast / 1.054
2rc5 FADFerredoxin--NADP reductase / 0.965
3w5u FADFerredoxin / 0.953
1gaw FADFerredoxin / 0.943
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.940
1sm4 FADFerredoxin--NADP reductase / 0.935
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.913
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.912
3zbt FADFerredoxin--NADP reductase 1.18.1.2 0.908
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.901
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.895
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.894
1gaq FADFerredoxin / 0.892
3vo2 FADFerredoxin--NADP reductase / 0.889
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.884
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.884
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.882
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 0.880
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.878
1w35 FADFerredoxin--NADP reductase 1.18.1.2 0.877
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.876
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.875
1tll FADNitric oxide synthase, brain 1.14.13.39 0.875
1que FADFerredoxin--NADP reductase 1.18.1.2 0.868
1e62 FADFerredoxin--NADP reductase 1.18.1.2 0.864
4bpr FADFerredoxin--NADP reductase 1.18.1.2 0.860
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.858
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.858
3fpk FADFerredoxin-NADP reductase / 0.856
1cqx FADFlavohemoprotein / 0.854
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.851
1b2r FADFerredoxin--NADP reductase 1.18.1.2 0.848
1ewy FADFerredoxin--NADP reductase 1.18.1.2 0.847
1e64 FADFerredoxin--NADP reductase 1.18.1.2 0.845
4yaf FADNADPH--cytochrome P450 reductase / 0.844
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.837
3ojw FADNADPH--cytochrome P450 reductase / 0.837
2bn4 FADNADPH--cytochrome P450 reductase / 0.834
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.831
4c43 FADFerredoxin--NADP reductase 1.18.1.2 0.822
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.812
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.811
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.809
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.805
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.805
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.802
2pia FMNPhthalate dioxygenase reductase / 0.800
4yau FADNADPH--cytochrome P450 reductase / 0.794
2rc6 FADFerredoxin--NADP reductase / 0.793
2vyq FADFerredoxin--NADP reductase 1.18.1.2 0.787
4yao FADNADPH--cytochrome P450 reductase / 0.787
1j9z FADNADPH--cytochrome P450 reductase / 0.786
1w34 FADFerredoxin--NADP reductase 1.18.1.2 0.784
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.780
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.778
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.777
1gjr FADFerredoxin--NADP reductase 1.18.1.2 0.776
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.776
1qgz FADFerredoxin--NADP reductase 1.18.1.2 0.773
3qe2 FADNADPH--cytochrome P450 reductase / 0.772
1gvh FADFlavohemoprotein / 0.771
4k1x FADNADPH:ferredoxin reductase / 0.771
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.770
2gpj FADSiderophore-interacting protein / 0.757
3qfr FADNADPH--cytochrome P450 reductase / 0.755
3e4v FMNUncharacterized protein / 0.754
1amo FADNADPH--cytochrome P450 reductase / 0.753
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.753
1a8p FADFerredoxin--NADP reductase / 0.752
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.747
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.746
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.737
3in6 FMNUncharacterized protein / 0.731
3qfs FADNADPH--cytochrome P450 reductase / 0.731
1ja1 FADNADPH--cytochrome P450 reductase / 0.726
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.722
4f07 FADStyrene monooxygenase component 2 / 0.720
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.719
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.718
2bf4 FADNADPH--cytochrome P450 reductase / 0.717
3a3b RBFLumazine protein / 0.717
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.714
1eje FMNProtein MTH_152 / 0.711
1ja0 FADNADPH--cytochrome P450 reductase / 0.705
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.700
3ka7 FADPutative oxidoreductase / 0.699
4udq FAD5-(hydroxymethyl)furfural oxidase / 0.699
2eix FADNADH-cytochrome b5 reductase / 0.698
4z24 FADPutative GMC-type oxidoreductase R135 1 0.697
2bpo FADNADPH--cytochrome P450 reductase / 0.695
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.694
4fk8 FADFerredoxin--NADP reductase / 0.694
1rz1 FADPhenol 2-hydroxylase component B / 0.693
4y9u FADNADPH--cytochrome P450 reductase / 0.693
4y7c FADNADPH--cytochrome P450 reductase / 0.683
1rz0 FADPhenol 2-hydroxylase component B / 0.682
2a1u FADElectron transfer flavoprotein subunit alpha, mitochondrial / 0.681
2y48 FADLysine-specific histone demethylase 1A 1 0.681
3crz FADFerredoxin--NADP+ reductase / 0.675
4c3x FAD3-ketosteroid dehydrogenase / 0.674
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.673
1efp FADElectron transfer flavoprotein subunit alpha / 0.672
1get FADGlutathione reductase 1.8.1.7 0.672
2yqu FADDihydrolipoyl dehydrogenase / 0.672
5buk FADFADH2-dependent halogenase / 0.671
3a3g DLZLumazine protein / 0.670
5af7 FADAcyl-CoA dehydrogenase / 0.670
5g3s FDAFlavin-dependent L-tryptophan oxidase VioA / 0.670
3sfd FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.669
3a20 FMNFMN-binding protein / 0.667
3eo8 FMNPutative nitroreductase / 0.667
3cnt FADPolyamine oxidase FMS1 / 0.666
1usc FMNMonooxygenase / 0.665
4rhe FMNFlavin prenyltransferase UbiX / 0.665
5ahs FADAcyl-CoA dehydrogenase / 0.665
2ed4 FAD4-hydroxyphenylacetate 3-monooxygenase reductase component 1.5.1.36 0.664
2nr4 FMNConserved protein / 0.663
3t37 FADPyridoxine 4-oxidase / 0.663
4qvb F42F420H(2)-dependent reductase Rv1155 1.4.3.5 0.663
3qfc FADNADPH--cytochrome P450 reductase / 0.662
3sfe FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.662
4z2t FAD2-hydroxybiphenyl-3-monooxygenase / 0.662
4ttc FMNIodotyrosine deiodinase 1 / 0.661
4gur FADLysine-specific histone demethylase 1B 1 0.660
1wlk FMNFMN-binding protein / 0.659
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.659
3all FAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase / 0.658
3q9t FAYUncharacterized protein / 0.658
3vy2 FMNFMN-binding protein / 0.658
3m13 FADMonomeric sarcosine oxidase 1.5.3.1 0.657
4ynt FDAGlucose oxidase, putative / 0.657
4y9r FADNADPH--cytochrome P450 reductase / 0.656
1xdi FADNAD(P)H dehydrogenase (quinone) / 0.655
2vnj FADNADPH:ferredoxin reductase / 0.654
4fwj FADLysine-specific histone demethylase 1B 1 0.654
1zy8 FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.653
3sm8 FNKFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.652
3uoz FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.652
1ebd FADDihydrolipoyl dehydrogenase 1.8.1.4 0.650
2tpr FADTrypanothione reductase 1.8.1.12 0.650