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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3iw1 ASD Steroid C26-monooxygenase 1.14.13.141

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
3iw1 ASDSteroid C26-monooxygenase 1.14.13.141 0.993
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4e5l DBHPolymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
1gwr ESTEstrogen receptor / 0.725
2qgt EEDEstrogen receptor / 0.722
4pxm ESTEstrogen receptor / 0.715
5dxg ESTEstrogen receptor / 0.714
2abi 1CAMineralocorticoid receptor / 0.706
3cas ASD3-oxo-5-beta-steroid 4-dehydrogenase / 0.705
1ya3 STRMineralocorticoid receptor / 0.698
2j7x ESTEstrogen receptor beta / 0.698
3bej MUFBile acid receptor / 0.694
3s79 ASDAromatase 1.14.14.14 0.693
1kdm DHTSex hormone-binding globulin / 0.688
2ocf ESTEstrogen receptor / 0.688
1g50 ESTEstrogen receptor / 0.687
1p8d CO1Oxysterols receptor LXR-beta / 0.682
2aa6 STRMineralocorticoid receptor / 0.681
2aa5 STRMineralocorticoid receptor / 0.679
1xf0 ASDAldo-keto reductase family 1 member C3 / 0.678
4ofr DHTAndrogen receptor / 0.677
4y8w STRSteroid 21-hydroxylase / 0.676
1lho AOMSex hormone-binding globulin / 0.674
1kdk DHTSex hormone-binding globulin / 0.672
4p6x HCYGlucocorticoid receptor / 0.672
1lhn AONSex hormone-binding globulin / 0.671
4bqu CLRJapanin / 0.670
1t7t DHTAndrogen receptor / 0.669
1t73 DHTAndrogen receptor / 0.668
4j24 ESTEstrogen receptor beta / 0.668
1t74 DHTAndrogen receptor / 0.665
1t79 DHTAndrogen receptor / 0.665
2piu DHTAndrogen receptor / 0.665
1t5z DHTAndrogen receptor / 0.664
1t7r DHTAndrogen receptor / 0.664
2pip DHTAndrogen receptor / 0.664
2pit DHTAndrogen receptor / 0.664
4oey DHTAndrogen receptor / 0.664
1qyx ASDEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.663
2q7i TESAndrogen receptor / 0.663
2q7k TESAndrogen receptor / 0.663
3oll ESTEstrogen receptor beta / 0.663
2ylp TESAndrogen receptor / 0.662
2ama DHTAndrogen receptor / 0.661
3cot STR3-oxo-5-beta-steroid 4-dehydrogenase / 0.661
4udc DEXGlucocorticoid receptor / 0.661
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pio DHTAndrogen receptor / 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2aib ERGBeta-elicitin cinnamomin / 0.659
2b1z 17MEstrogen receptor / 0.658
5hyr ESTEstrogen receptor / 0.658
2d06 ESTSulfotransferase 1A1 2.8.2.1 0.657
4j26 ESTEstrogen receptor beta / 0.657
4oed DHTAndrogen receptor / 0.657
2y02 Y01Beta-1 adrenergic receptor / 0.655
2yja ESTEstrogen receptor / 0.654
3nhx ASDSteroid Delta-isomerase 5.3.3.1 0.654
1t63 DHTAndrogen receptor / 0.650
1xu7 CPSCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.650
3w1w CHDFerrochelatase, mitochondrial 4.99.1.1 0.650
3w5q 3KLVitamin D3 receptor / 0.650