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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ert OHT Estrogen receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ert OHTEstrogen receptor / 1.319
2bj4 OHTEstrogen receptor / 1.113
2jf9 OHTEstrogen receptor / 0.974
1uom PTIEstrogen receptor / 0.826
1xpc AITEstrogen receptor / 0.795
4iw6 1GUEstrogen receptor / 0.770
1xp9 AIJEstrogen receptor / 0.755
1xqc AEJEstrogen receptor / 0.750
1s9q OHTEstrogen-related receptor gamma / 0.747
2gpu OHTEstrogen-related receptor gamma / 0.742
1sj0 E4DEstrogen receptor / 0.737
2qe4 JJ3Estrogen receptor / 0.730
2ewp TXFEstrogen-related receptor gamma / 0.726
4iv4 1GSEstrogen receptor / 0.713
2p7z OHTEstrogen-related receptor gamma / 0.699
1yin CM3Estrogen receptor / 0.687
4e5l DBHPolymerase acidic protein / 0.675
5dx3 ESTEstrogen receptor / 0.675
2gpv OHTEstrogen-related receptor gamma / 0.673
5hyr ESTEstrogen receptor / 0.672
2fsz OHTEstrogen receptor beta / 0.670
1x7r GENEstrogen receptor / 0.668
4ivw 1GJEstrogen receptor / 0.667
4e5f 0N7Polymerase acidic protein / 0.665
1xp6 AIUEstrogen receptor / 0.660
4e5i 0N9Polymerase acidic protein / 0.660
2jfa RALEstrogen receptor / 0.658
1x7e 244Estrogen receptor / 0.653
1l2j ETCEstrogen receptor beta / 0.652
2qgt EEDEstrogen receptor / 0.652
4pp6 STLEstrogen receptor / 0.652