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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3eft 3BS Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3eft 3BSCarbonic anhydrase 2 4.2.1.1 0.976
3rz8 RZ8Carbonic anhydrase 2 4.2.1.1 0.793
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.775
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.771
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.768
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.765
3oy0 OY0Carbonic anhydrase 2 4.2.1.1 0.756
1okm SABCarbonic anhydrase 2 4.2.1.1 0.754
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.753
3oys OYSCarbonic anhydrase 2 4.2.1.1 0.752
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.751
2q1q OSPCarbonic anhydrase 2 4.2.1.1 0.749
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.747
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1if7 SBRCarbonic anhydrase 2 4.2.1.1 0.740
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.736
3dcs MZMCarbonic anhydrase 2 4.2.1.1 0.733
1cny EG3Carbonic anhydrase 2 4.2.1.1 0.731
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.731
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.726
1okn STBCarbonic anhydrase 2 4.2.1.1 0.726
1xpz 4TZCarbonic anhydrase 2 4.2.1.1 0.725
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.723
1i9q IOFCarbonic anhydrase 2 4.2.1.1 0.720
3daz MZMCarbonic anhydrase 2 4.2.1.1 0.719
3m5e JDRCarbonic anhydrase 2 4.2.1.1 0.719
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.719
3igp DT7Carbonic anhydrase 2 4.2.1.1 0.715
4dz7 D02Carbonic anhydrase 2 4.2.1.1 0.715
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.715
1g45 FSBCarbonic anhydrase 2 4.2.1.1 0.713
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.710
3qyk IE2Carbonic anhydrase 2 4.2.1.1 0.709
4ilx 1EZCarbonic anhydrase 2 4.2.1.1 0.708
3dd8 2C7Carbonic anhydrase 2 4.2.1.1 0.707
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.707
4uov AZMCarbonate dehydratase / 0.706
3dcc D9ZCarbonic anhydrase 2 4.2.1.1 0.703
3m2y BE0Carbonic anhydrase 2 4.2.1.1 0.699
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.698
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.698
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.697
3d9z D9ZCarbonic anhydrase 2 4.2.1.1 0.696
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.696
1bnv AL7Carbonic anhydrase 2 4.2.1.1 0.695
3f4x KLTCarbonic anhydrase 2 4.2.1.1 0.694
3mhl J71Carbonic anhydrase 2 4.2.1.1 0.693
3oik WZBCarbonic anhydrase 2 4.2.1.1 0.693
1bnn AL1Carbonic anhydrase 2 4.2.1.1 0.691
1bnu AL3Carbonic anhydrase 2 4.2.1.1 0.690
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.687
3n2p AYXCarbonic anhydrase 2 4.2.1.1 0.687
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.685
1if6 FBUCarbonic anhydrase 2 4.2.1.1 0.684
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.684
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.683
3mna DWHCarbonic anhydrase 2 4.2.1.1 0.683
4xiw AZMCarbonic anhydrase, alpha type / 0.681
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.680
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.678
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.678
3hku TORCarbonic anhydrase 2 4.2.1.1 0.678
2h15 B19Carbonic anhydrase 2 4.2.1.1 0.674
3k2f NKXCarbonic anhydrase 2 4.2.1.1 0.674
1i90 INMCarbonic anhydrase 2 4.2.1.1 0.673
1i9p IOECarbonic anhydrase 2 4.2.1.1 0.673
1kwr SG2Carbonic anhydrase 2 4.2.1.1 0.672
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.671
3mhc ARZCarbonic anhydrase 2 4.2.1.1 0.671
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.671
1bn1 AL5Carbonic anhydrase 2 4.2.1.1 0.670
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.670
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.670
3ni5 C1HCarbonic anhydrase 2 4.2.1.1 0.668
3m2n J74Carbonic anhydrase 2 4.2.1.1 0.667
4kni E1ECarbonic anhydrase 2 4.2.1.1 0.667
2wd2 MS5Carbonic anhydrase 2 4.2.1.1 0.665
1bn4 AL9Carbonic anhydrase 2 4.2.1.1 0.662
1cnw EG1Carbonic anhydrase 2 4.2.1.1 0.662
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.661
3t84 SG6Carbonic anhydrase 2 4.2.1.1 0.660
3lxe TORCarbonic anhydrase 1 4.2.1.1 0.656
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.654
3s9t E49Carbonic anhydrase 2 4.2.1.1 0.653
2x7t WZBCarbonic anhydrase 2 4.2.1.1 0.652