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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3dcc D9Z Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3dcc D9ZCarbonic anhydrase 2 4.2.1.1 0.881
3d9z D9ZCarbonic anhydrase 2 4.2.1.1 0.877
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.825
3dcs MZMCarbonic anhydrase 2 4.2.1.1 0.789
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.786
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.774
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.774
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.770
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.756
4uov AZMCarbonate dehydratase / 0.752
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.749
3mdz EZLCarbonic anhydrase 7 4.2.1.1 0.746
4xiw AZMCarbonic anhydrase, alpha type / 0.746
1dmy AZMCarbonic anhydrase 5A, mitochondrial 4.2.1.1 0.744
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.743
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.733
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.731
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.723
3d8w D8WCarbonic anhydrase 2 4.2.1.1 0.723
3mhc ARZCarbonic anhydrase 2 4.2.1.1 0.722
3daz MZMCarbonic anhydrase 2 4.2.1.1 0.721
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.719
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.718
1okm SABCarbonic anhydrase 2 4.2.1.1 0.718
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.717
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.714
3n2p AYXCarbonic anhydrase 2 4.2.1.1 0.714
4k0z MZMCarbonic anhydrase 2 4.2.1.1 0.714
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.711
3ni5 C1HCarbonic anhydrase 2 4.2.1.1 0.711
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.709
2wd2 MS5Carbonic anhydrase 2 4.2.1.1 0.707
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.707
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.707
1if8 SBSCarbonic anhydrase 2 4.2.1.1 0.706
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.706
1bzm MZMCarbonic anhydrase 1 4.2.1.1 0.705
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.705
4dz7 D02Carbonic anhydrase 2 4.2.1.1 0.705
1if7 SBRCarbonic anhydrase 2 4.2.1.1 0.703
3eft 3BSCarbonic anhydrase 2 4.2.1.1 0.703
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.703
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.703
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.701
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.700
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.700
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.700
1bnm AL8Carbonic anhydrase 2 4.2.1.1 0.699
1bnv AL7Carbonic anhydrase 2 4.2.1.1 0.699
3mho J43Carbonic anhydrase 2 4.2.1.1 0.699
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.698
3mna DWHCarbonic anhydrase 2 4.2.1.1 0.698
3n3j WWVCarbonic anhydrase 2 4.2.1.1 0.698
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.697
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.695
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.695
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.693
1bnq AL4Carbonic anhydrase 2 4.2.1.1 0.691
3mhl J71Carbonic anhydrase 2 4.2.1.1 0.691
1g45 FSBCarbonic anhydrase 2 4.2.1.1 0.690
1i9p IOECarbonic anhydrase 2 4.2.1.1 0.684
2h15 B19Carbonic anhydrase 2 4.2.1.1 0.684
1i8z INLCarbonic anhydrase 2 4.2.1.1 0.681
3f4x KLTCarbonic anhydrase 2 4.2.1.1 0.681
3m2n J74Carbonic anhydrase 2 4.2.1.1 0.681
4ilx 1EZCarbonic anhydrase 2 4.2.1.1 0.680
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.680
3dd8 2C7Carbonic anhydrase 2 4.2.1.1 0.678
3m5e JDRCarbonic anhydrase 2 4.2.1.1 0.677
1xpz 4TZCarbonic anhydrase 2 4.2.1.1 0.672
3m98 E02Carbonic anhydrase 2 4.2.1.1 0.671
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.671
1cnx EG2Carbonic anhydrase 2 4.2.1.1 0.669
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.667
3l14 I7BCarbonic anhydrase 2 4.2.1.1 0.665
1kwr SG2Carbonic anhydrase 2 4.2.1.1 0.662
4kp8 E1GCarbonic anhydrase 12 4.2.1.1 0.660
3f7b AG5Carbonic anhydrase 4 4.2.1.1 0.659
1yda AZMCarbonic anhydrase 2 4.2.1.1 0.658
1bn1 AL5Carbonic anhydrase 2 4.2.1.1 0.657
3oik WZBCarbonic anhydrase 2 4.2.1.1 0.655
1cnw EG1Carbonic anhydrase 2 4.2.1.1 0.652
1bn3 AL6Carbonic anhydrase 2 4.2.1.1 0.651
3m96 E38Carbonic anhydrase 2 4.2.1.1 0.651
3po6 DT9Carbonic anhydrase 2 4.2.1.1 0.650
4n16 CHDCarbonic anhydrase 2 4.2.1.1 0.650