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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3dc3 AZM Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.842
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.836
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.821
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.805
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.786
4xiw AZMCarbonic anhydrase, alpha type / 0.785
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.783
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.782
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.781
4uov AZMCarbonate dehydratase / 0.781
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.777
3mhc ARZCarbonic anhydrase 2 4.2.1.1 0.775
3d9z D9ZCarbonic anhydrase 2 4.2.1.1 0.774
3dcc D9ZCarbonic anhydrase 2 4.2.1.1 0.774
3ni5 C1HCarbonic anhydrase 2 4.2.1.1 0.767
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.764
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.760
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.758
3mdz EZLCarbonic anhydrase 7 4.2.1.1 0.758
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.754
1kwr SG2Carbonic anhydrase 2 4.2.1.1 0.753
3dcs MZMCarbonic anhydrase 2 4.2.1.1 0.744
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.740
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.740
1dmy AZMCarbonic anhydrase 5A, mitochondrial 4.2.1.1 0.739
3m2n J74Carbonic anhydrase 2 4.2.1.1 0.738
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.737
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.737
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.737
4k0z MZMCarbonic anhydrase 2 4.2.1.1 0.735
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.732
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.731
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.731
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.729
3d8w D8WCarbonic anhydrase 2 4.2.1.1 0.728
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.726
1bn1 AL5Carbonic anhydrase 2 4.2.1.1 0.724
1bnu AL3Carbonic anhydrase 2 4.2.1.1 0.719
1if7 SBRCarbonic anhydrase 2 4.2.1.1 0.719
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.719
4dz7 D02Carbonic anhydrase 2 4.2.1.1 0.719
1bn3 AL6Carbonic anhydrase 2 4.2.1.1 0.718
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.718
3mhl J71Carbonic anhydrase 2 4.2.1.1 0.718
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.718
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.717
1bn4 AL9Carbonic anhydrase 2 4.2.1.1 0.716
1bnm AL8Carbonic anhydrase 2 4.2.1.1 0.716
1bnn AL1Carbonic anhydrase 2 4.2.1.1 0.716
1bzm MZMCarbonic anhydrase 1 4.2.1.1 0.716
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.716
1okm SABCarbonic anhydrase 2 4.2.1.1 0.716
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.716
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.715
2q1q OSPCarbonic anhydrase 2 4.2.1.1 0.715
3daz MZMCarbonic anhydrase 2 4.2.1.1 0.715
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.714
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.713
1i8z INLCarbonic anhydrase 2 4.2.1.1 0.711
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.711
3mho J43Carbonic anhydrase 2 4.2.1.1 0.710
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.709
3n2p AYXCarbonic anhydrase 2 4.2.1.1 0.709
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.709
3qyk IE2Carbonic anhydrase 2 4.2.1.1 0.708
3s8x E59Carbonic anhydrase 2 4.2.1.1 0.708
1bnv AL7Carbonic anhydrase 2 4.2.1.1 0.707
3mna DWHCarbonic anhydrase 2 4.2.1.1 0.706
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.705
3igp DT7Carbonic anhydrase 2 4.2.1.1 0.704
4itp 1GDCarbonic anhydrase 2 4.2.1.1 0.704
1g4j FFBCarbonic anhydrase 2 4.2.1.1 0.703
3m5e JDRCarbonic anhydrase 2 4.2.1.1 0.703
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.703
4kp8 E1GCarbonic anhydrase 12 4.2.1.1 0.703
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.703
1if8 SBSCarbonic anhydrase 2 4.2.1.1 0.702
1okn STBCarbonic anhydrase 2 4.2.1.1 0.702
1i9q IOFCarbonic anhydrase 2 4.2.1.1 0.700
3dd8 2C7Carbonic anhydrase 2 4.2.1.1 0.699
1if5 FBTCarbonic anhydrase 2 4.2.1.1 0.698
1yda AZMCarbonic anhydrase 2 4.2.1.1 0.698
2nmx M25Carbonic anhydrase 1 4.2.1.1 0.698
4ht2 V50Carbonic anhydrase 12 4.2.1.1 0.697
3rz8 RZ8Carbonic anhydrase 2 4.2.1.1 0.696
1cnw EG1Carbonic anhydrase 2 4.2.1.1 0.695
1cnx EG2Carbonic anhydrase 2 4.2.1.1 0.693
1cny EG3Carbonic anhydrase 2 4.2.1.1 0.693
5fl4 9FKCarbonic anhydrase 9 4.2.1.1 0.692
1if6 FBUCarbonic anhydrase 2 4.2.1.1 0.690
3m2y BE0Carbonic anhydrase 2 4.2.1.1 0.690
4bf1 9FKCarbonic anhydrase 2 4.2.1.1 0.690
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.688
2wd2 MS5Carbonic anhydrase 2 4.2.1.1 0.688
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.686
1g45 FSBCarbonic anhydrase 2 4.2.1.1 0.685
1xpz 4TZCarbonic anhydrase 2 4.2.1.1 0.684
1i90 INMCarbonic anhydrase 2 4.2.1.1 0.679
4kap 1QVCarbonic anhydrase 2 4.2.1.1 0.679
3eft 3BSCarbonic anhydrase 2 4.2.1.1 0.678
3k2f NKXCarbonic anhydrase 2 4.2.1.1 0.676
1xq0 4TRCarbonic anhydrase 2 4.2.1.1 0.675
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.675
1bnq AL4Carbonic anhydrase 2 4.2.1.1 0.674
2h15 B19Carbonic anhydrase 2 4.2.1.1 0.673
3lxe TORCarbonic anhydrase 1 4.2.1.1 0.671
1i9p IOECarbonic anhydrase 2 4.2.1.1 0.670
3po6 DT9Carbonic anhydrase 2 4.2.1.1 0.670
3l14 I7BCarbonic anhydrase 2 4.2.1.1 0.669
3f7u AG4Carbonic anhydrase 4 4.2.1.1 0.667
1a42 BZUCarbonic anhydrase 2 4.2.1.1 0.664
3ml2 SU0Carbonic anhydrase 2 4.2.1.1 0.664
3s9t E49Carbonic anhydrase 2 4.2.1.1 0.660
2weh FB1Carbonic anhydrase 2 4.2.1.1 0.658
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.655
4pah LNRPhenylalanine-4-hydroxylase 1.14.16.1 0.655
1okl MNSCarbonic anhydrase 2 4.2.1.1 0.652
4knn E1FCarbonic anhydrase 13 4.2.1.1 0.651