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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3cmf PDN 3-oxo-5-beta-steroid 4-dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3cmf PDN3-oxo-5-beta-steroid 4-dehydrogenase / 1.055
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
2puc GUNHTH-type transcriptional repressor PurR / 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4e5l DBHPolymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
1kdm DHTSex hormone-binding globulin / 0.700
1xf0 ASDAldo-keto reductase family 1 member C3 / 0.689
3uzz ASD3-oxo-5-beta-steroid 4-dehydrogenase / 0.682
2z4j DHTAndrogen receptor / 0.679
1t76 DHTAndrogen receptor / 0.678
2pkl DHTAndrogen receptor / 0.678
1y9r 1CAMineralocorticoid receptor / 0.676
1f5f DHTSex hormone-binding globulin / 0.670
1t7f DHTAndrogen receptor / 0.670
1t7t DHTAndrogen receptor / 0.670
2yhd TESAndrogen receptor / 0.669
3uzz TES3-oxo-5-beta-steroid 4-dehydrogenase / 0.667
1jtv TESEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.666
2abi 1CAMineralocorticoid receptor / 0.666
4k7a DHTAndrogen receptor / 0.664
4oed DHTAndrogen receptor / 0.664
4at2 ASDPossible succinate dehydrogenase / 0.663
2qpy DHTAndrogen receptor / 0.661
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1t63 DHTAndrogen receptor / 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1t79 DHTAndrogen receptor / 0.659
2ab2 SNLMineralocorticoid receptor / 0.658
4oea DHTAndrogen receptor / 0.658
4oey DHTAndrogen receptor / 0.656
1lho AOMSex hormone-binding globulin / 0.654
2ovh AS0Progesterone receptor / 0.654
1t7m DHTAndrogen receptor / 0.653
2ama DHTAndrogen receptor / 0.653
4ofu DHTAndrogen receptor / 0.653
2ovm AS0Progesterone receptor / 0.652
1t5z DHTAndrogen receptor / 0.650
2ylo TESAndrogen receptor / 0.650