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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3c96 FAD Flavin-containing monooxygenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
3c96 FADFlavin-containing monooxygenase / 1.212
2rgj FADFlavin-containing monooxygenase / 1.073
4em3 FADCoenzyme A disulfide reductase / 0.759
1e1m FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.753
1e6e FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.750
1e1k FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.749
1cjc FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.748
5cku FADL-ornithine N(5)-monooxygenase / 0.739
4b69 FADL-ornithine N(5)-monooxygenase / 0.728
1k0l FADp-hydroxybenzoate hydroxylase / 0.719
1gte FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.717
2c7g FADNADPH-ferredoxin reductase FprA 1.18.1.2 0.716
4d7e FADPutative lysine-N-oxygenase / 0.712
4k2x FADPolyketide oxygenase/hydroxylase / 0.712
1e1l FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.711
4eqs FADCoenzyme A disulfide reductase / 0.710
1nhr FADNADH peroxidase 1.11.1.1 0.703
1nhq FADNADH peroxidase 1.11.1.1 0.700
1h7w FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.696
1gth FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.694
1nhs FADNADH peroxidase 1.11.1.1 0.686
3l8k ADPDihydrolipoamide dehydrogenase (PdhD-3) / 0.683
4eqx FADCoenzyme A disulfide reductase / 0.682
1cbo FADCholesterol oxidase 1.1.3.6 0.681
1nhp FADNADH peroxidase 1.11.1.1 0.681
1npx FADNADH peroxidase 1.11.1.1 0.681
3oc4 FADOxidoreductase, pyridine nucleotide-disulfide family / 0.681
3s5w FADL-ornithine N(5)-monooxygenase / 0.677
2c31 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.676
3b6d FAECholesterol oxidase 1.1.3.6 0.675
4em4 FADCoenzyme A disulfide reductase / 0.674
4emw FADCoenzyme A disulfide reductase / 0.674
2gv8 FADThiol-specific monooxygenase 1.14.13 0.672
3cge FADCoenzyme A disulfide reductase / 0.671
4b1b FADThioredoxin reductase 1.8.1.9 0.671
1b8s FADCholesterol oxidase 1.1.3.6 0.670
3k30 ADPHistamine dehydrogenase / 0.669
4z24 FADPutative GMC-type oxidoreductase R135 1 0.668
1jeh FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.666
3sm8 FNKFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.666
4hb9 FADUncharacterized protein / 0.666
2yqu FADDihydrolipoyl dehydrogenase / 0.665
4u2t FADCholesterol oxidase 1.1.3.6 0.664
2yg6 FADPutrescine oxidase / 0.663
3bg7 FADPyranose 2-oxidase / 0.663
4yac NAIC alpha-dehydrogenase / 0.663
3sz0 FADSulfide-quinone reductase / 0.661
3ka7 FADPutative oxidoreductase / 0.660
1lqu FADNADPH-ferredoxin reductase FprA 1.18.1.2 0.658
2gew FADCholesterol oxidase 1.1.3.6 0.658
3gyi FADCholesterol oxidase 1.1.3.6 0.658
4nzh FADL-ornithine N(5)-monooxygenase / 0.658
3bgi SAHThiopurine S-methyltransferase 2.1.1.67 0.657
4iv8 SAMPhosphoethanolamine N-methyltransferase,putative / 0.657
1b4v FADCholesterol oxidase 1.1.3.6 0.656
2c3c FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.655
3vqr FADPutative oxidoreductase / 0.655
4xwr FADCholesterol oxidase 1.1.3.6 0.655
1cc2 FADCholesterol oxidase 1.1.3.6 0.653
1h2h NADL-aspartate dehydrogenase 1.4.1.21 0.653
3cnj FADCholesterol oxidase 1.1.3.6 0.653
3kpk FADSulfide-quinone reductase / 0.653
4guv FADTetX family tetracycline inactivation enzyme / 0.653
4qi7 FADCellobiose dehydrogenase / 0.652
3grs FADGlutathione reductase, mitochondrial 1.8.1.7 0.650
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.650
4rek FADCholesterol oxidase 1.1.3.6 0.650