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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2xjx XJX Heat shock protein HSP 90-alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2xjx XJXHeat shock protein HSP 90-alpha / 1.005
2xjj L81Heat shock protein HSP 90-alpha / 0.934
2xab VHDHeat shock protein HSP 90-alpha / 0.911
2xjg XJGHeat shock protein HSP 90-alpha / 0.856
3k98 1RCHeat shock protein HSP 90-alpha / 0.845
3k99 PFTHeat shock protein HSP 90-alpha / 0.832
2xht C0YHeat shock protein HSP 90-alpha / 0.810
2yi6 6QMHeat shock protein HSP 90-alpha / 0.794
3k97 4CDHeat shock protein HSP 90-alpha / 0.792
4egk RDCHeat shock protein HSP 90-alpha / 0.791
4efu EFUHeat shock protein HSP 90-alpha / 0.768
3ekr PY9Heat shock protein HSP 90-alpha / 0.758
3hhu 819Heat shock protein HSP 90-alpha / 0.751
3eko PYUHeat shock protein HSP 90-alpha / 0.750
2yjw YJWHeat shock protein HSP 90-alpha / 0.749
4b7p 9UNHeat shock protein HSP 90-alpha / 0.747
2yi7 BZ8Heat shock protein HSP 90-alpha / 0.746
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1yc4 43PHeat shock protein HSP 90-alpha / 0.739
2bt0 CT5Heat shock protein HSP 90-alpha / 0.735
1qy8 RDIEndoplasmin / 0.732
2ye4 2FYHeat shock protein HSP 90-alpha / 0.726
3hek BD0Heat shock protein HSP 90-alpha / 0.724
4egh 0OYHeat shock protein HSP 90-alpha / 0.719
1u0z RDCEndoplasmin / 0.717
2byi 2DDHeat shock protein HSP 90-alpha / 0.714
2yi5 YI5Heat shock protein HSP 90-alpha / 0.713
3inw JZBHeat shock protein HSP 90-alpha / 0.706
2ccu 2D9Heat shock protein HSP 90-alpha / 0.703
2uwd 2GGHeat shock protein HSP 90-alpha / 0.695
4bqj XKLHeat shock protein HSP 90-alpha / 0.692
4mp2 PV1[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial 2.7.11.2 0.689
1bgq RDCATP-dependent molecular chaperone HSP82 / 0.688
2xx2 13CATP-dependent molecular chaperone HSP82 / 0.687
2brc CT5ATP-dependent molecular chaperone HSP82 / 0.679
2xd6 XD6ATP-dependent molecular chaperone HSP82 / 0.678
4e5l DBHPolymerase acidic protein / 0.672
2wer RDCATP-dependent molecular chaperone HSP82 / 0.667
2iwx M1SATP-dependent molecular chaperone HSP82 / 0.666
2cgf P2NATP-dependent molecular chaperone HSP82 / 0.664
4e5f 0N7Polymerase acidic protein / 0.660
2xhx T5MHeat shock protein HSP 90-alpha / 0.659
2vci 2GJHeat shock protein HSP 90-alpha / 0.655
2xx5 13NATP-dependent molecular chaperone HSP82 / 0.655
4ce2 BO5ATP-dependent molecular chaperone HSP82 / 0.655
3mo2 E67Histone-lysine N-methyltransferase EHMT1 / 0.652