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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2xdr NDP NAD/NADP-dependent betaine aldehyde dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2xdr NDPNAD/NADP-dependent betaine aldehyde dehydrogenase / 0.922
2wme NAPNAD/NADP-dependent betaine aldehyde dehydrogenase / 0.817
3zqa NDPNAD/NADP-dependent betaine aldehyde dehydrogenase / 0.816
4nmk NAPAldehyde dehydrogenase / 0.734
3rho NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.717
1qi1 NAPNADP-dependent glyceraldehyde-3-phosphate dehydrogenase 1.2.1.9 0.706
4nmj NAPAldehyde dehydrogenase / 0.702
4h73 NDPAldehyde dehydrogenase / 0.695
2o2r NDPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.688
5dib NADBetaine-aldehyde dehydrogenase / 0.684
2bja NAD1-pyrroline-5-carboxylate dehydrogenase / 0.683
3rhh NAPNADP-dependent glyceraldehyde-3-phosphate dehydrogenase / 0.682
5eyu NADBetaine-aldehyde dehydrogenase / 0.682
5ez4 NADBetaine-aldehyde dehydrogenase / 0.682
3iwj NADAminoaldehyde dehydrogenase / 0.677
4pz2 NADAldehyde dehydrogenase 2-6 / 0.677
3n83 ADPAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.671
4i9b NADPutative betaine aldehyde dehyrogenase / 0.671
4pt3 NDPAldehyde dehydrogenase / 0.670
1cw3 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.669
3haz NADBifunctional protein PutA / 0.658
3rhd NAPLactaldehyde dehydrogenase 1.2.1.22 0.658
4i8p NADAminoaldehyde dehydrogenase 1 / 0.657
4fr8 ADPAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.656
1eyy NAPNADP-dependent fatty aldehyde dehydrogenase 1.2.1.4 0.651
1ez0 NAPNADP-dependent fatty aldehyde dehydrogenase 1.2.1.4 0.651
2y5d NAP3,4-dehydroadipyl-CoA semialdehyde dehydrogenase / 0.650