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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2wer RDC ATP-dependent molecular chaperone HSP82

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2wer RDCATP-dependent molecular chaperone HSP82 / 0.941
1qy8 RDIEndoplasmin / 0.857
1u0z RDCEndoplasmin / 0.838
2xd6 XD6ATP-dependent molecular chaperone HSP82 / 0.824
2iwx M1SATP-dependent molecular chaperone HSP82 / 0.823
4ce2 BO5ATP-dependent molecular chaperone HSP82 / 0.810
1bgq RDCATP-dependent molecular chaperone HSP82 / 0.788
2cgf P2NATP-dependent molecular chaperone HSP82 / 0.783
4ce1 7FKATP-dependent molecular chaperone HSP82 / 0.781
2fxs RDAATP-dependent molecular chaperone HSP82 / 0.772
4egk RDCHeat shock protein HSP 90-alpha / 0.754
2gfd RDAEndoplasmin / 0.751
2brc CT5ATP-dependent molecular chaperone HSP82 / 0.750
3inw JZBHeat shock protein HSP 90-alpha / 0.746
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2hkj RDCType 2 DNA topoisomerase 6 subunit B / 0.741
4ce3 L4VATP-dependent molecular chaperone HSP82 / 0.735
2xx5 13NATP-dependent molecular chaperone HSP82 / 0.729
2iwu NP5ATP-dependent molecular chaperone HSP82 / 0.721
2xx2 13CATP-dependent molecular chaperone HSP82 / 0.715
2bre KJ2ATP-dependent molecular chaperone HSP82 / 0.707
2iws NP4ATP-dependent molecular chaperone HSP82 / 0.702
2yk2 YJWHeat shock protein HSP 90-alpha / 0.702
2yi5 YI5Heat shock protein HSP 90-alpha / 0.685
3eko PYUHeat shock protein HSP 90-alpha / 0.685
2ye4 2FYHeat shock protein HSP 90-alpha / 0.681
3k97 4CDHeat shock protein HSP 90-alpha / 0.675
2xjx XJXHeat shock protein HSP 90-alpha / 0.667
2xjg XJGHeat shock protein HSP 90-alpha / 0.665
3k99 PFTHeat shock protein HSP 90-alpha / 0.661
4e5f 0N7Polymerase acidic protein / 0.660
2yjw YJWHeat shock protein HSP 90-alpha / 0.655