sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2vxk | COA | Glucosamine 6-phosphate acetyltransferase, putative |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 2vxk | COA | Glucosamine 6-phosphate acetyltransferase, putative | / | 1.160 | |
| 2vez | ACO | Glucosamine 6-phosphate acetyltransferase, putative | / | 1.126 | |
| 1i12 | ACO | Glucosamine 6-phosphate N-acetyltransferase | / | 0.892 | |
| 3exn | ACO | Probable acetyltransferase | / | 0.819 | |
| 2zpa | ACO | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.816 | |
| 5kf9 | ACO | Predicted acetyltransferase | / | 0.810 | |
| 5kf8 | ACO | Predicted acetyltransferase | / | 0.794 | |
| 2q4v | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.793 | |
| 2cy2 | ACO | Probable acetyltransferase | / | 0.792 | |
| 5kgj | ACO | Predicted acetyltransferase | / | 0.790 | |
| 2bue | COA | AAC(6')-Ib | / | 0.769 | |
| 1tiq | COA | Spermidine/spermine N(1)-acetyltransferase | / | 0.766 | |
| 4ag9 | COA | Glucosamine 6-phosphate N-acetyltransferase | / | 0.762 | |
| 4ava | ACO | Acetyltransferase Pat | 2.3.1 | 0.761 | |
| 5kf2 | ACO | Predicted acetyltransferase | / | 0.761 | |
| 2vqy | ACO | AAC(6')-Ib | / | 0.751 | |
| 2rc4 | ACO | Histone acetyltransferase KAT6A | / | 0.750 | |
| 2cnt | COA | Ribosomal-protein-alanine acetyltransferase | / | 0.747 | |
| 2bsw | CAO | Probable acetyltransferase | / | 0.746 | |
| 2ozu | ACO | Histone acetyltransferase KAT6A | / | 0.741 | |
| 1fy7 | COA | Histone acetyltransferase ESA1 | / | 0.740 | |
| 4mxe | ACO | N-acetyltransferase ESCO1 | 2.3.1 | 0.738 | |
| 5h86 | BCO | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.733 | |
| 5h84 | 1VU | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.732 | |
| 2jdc | CAO | Probable acetyltransferase | / | 0.730 | |
| 2qir | COA | Aminoglycoside 6-N-acetyltransferase type Ib11 | / | 0.730 | |
| 4qvt | ACO | Acetyltransferase YpeA | 2.3.1 | 0.730 | |
| 1mj9 | COA | Histone acetyltransferase ESA1 | / | 0.724 | |
| 5kf1 | ACO | Predicted acetyltransferase | / | 0.722 | |
| 1j4j | ACO | Acetyltransferase | 2.3.1 | 0.721 | |
| 3gya | COA | GCN5-related N-acetyltransferase | / | 0.720 | |
| 1qsr | ACO | HAT A1 | / | 0.718 | |
| 2jev | NHQ | Diamine acetyltransferase 1 | / | 0.717 | |
| 3d2m | COA | Amino-acid acetyltransferase | / | 0.716 | |
| 2jdd | ACO | Probable acetyltransferase | / | 0.712 | |
| 2ou2 | ACO | Histone acetyltransferase KAT5 | / | 0.712 | |
| 4ag7 | COA | Glucosamine 6-phosphate N-acetyltransferase | / | 0.711 | |
| 1pu9 | COA | HAT A1 | / | 0.710 | |
| 4cry | ACO | PanD regulatory factor | / | 0.708 | |
| 2y0m | ACO | Histone acetyltransferase KAT8 | / | 0.705 | |
| 2c27 | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.701 | |
| 3zj0 | ACO | Putative acetyltransferase OgpAT | / | 0.700 | |
| 3gy9 | COA | GCN5-related N-acetyltransferase | / | 0.698 | |
| 5kf2 | COA | Predicted acetyltransferase | / | 0.698 | |
| 1b87 | ACO | Aac(6')-Ii protein | / | 0.692 | |
| 2ob0 | ACO | N-alpha-acetyltransferase 50 | / | 0.691 | |
| 3f0a | ACO | Spermidine N(1)-acetyltransferase | / | 0.691 | |
| 4crz | ACO | PanD regulatory factor | / | 0.691 | |
| 4r3k | COA | N-alpha-acetyltransferase | 2.3.1 | 0.690 | |
| 2fxf | ACO | Diamine acetyltransferase 1 | / | 0.689 | |
| 5kf8 | COA | Predicted acetyltransferase | / | 0.684 | |
| 1n71 | COA | Aac(6')-Ii protein | / | 0.683 | |
| 1wwz | ACO | Uncharacterized protein | / | 0.682 | |
| 1bob | ACO | Histone acetyltransferase type B catalytic subunit | / | 0.680 | |
| 4h6u | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.672 | |
| 4ua3 | COA | N-alpha-acetyltransferase 40 | 2.3.1 | 0.671 | |
| 1qsm | ACO | Histone acetyltransferase HPA2 | / | 0.670 | |
| 3pgp | ACO | Uncharacterized protein | / | 0.669 | |
| 1mja | COA | Histone acetyltransferase ESA1 | / | 0.667 | |
| 2prb | COA | Aminoglycoside 6-N-acetyltransferase type Ib11 | / | 0.667 | |
| 3fbu | COA | Acetyltransferase, GNAT family | / | 0.666 | |
| 4cs0 | ACO | PanD regulatory factor | / | 0.666 | |
| 3bj7 | COA | Diamine acetyltransferase 1 | / | 0.665 | |
| 4xnh | ACO | N-terminal acetyltransferase A complex subunit NAT5 | 2.3.1 | 0.663 | |
| 1s3z | COA | Aminoglycoside N(6')-acetyltransferase type 1 | / | 0.662 | |
| 1p0h | COA | Mycothiol acetyltransferase | 2.3.1.189 | 0.661 | |
| 3pw8 | ACO | 1,2-phenylacetyl-CoA epoxidase, subunit A | 1.14.13.149 | 0.661 | |
| 1mjb | ACO | Histone acetyltransferase ESA1 | / | 0.660 | |
| 1m1d | LYX | HAT A1 | / | 0.657 | |
| 3to6 | LYS_CMC | Histone acetyltransferase ESA1 | / | 0.654 | |
| 2x7b | COA | N-alpha-acetyltransferase | 2.3.1 | 0.652 | |
| 3k9u | ACO | Spermidine N(1)-acetyltransferase | / | 0.651 | |
| 4zm6 | ACO | N-acetyl-beta-D glucosaminidase | / | 0.650 | |
| 5kgp | ACO | Predicted acetyltransferase | / | 0.650 |