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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vnk FAD NADPH:ferredoxin reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2vnk FADNADPH:ferredoxin reductase / 1.514
2vnh FADNADPH:ferredoxin reductase / 1.316
2bgj FADNADPH:ferredoxin reductase / 1.314
2vnj FADNADPH:ferredoxin reductase / 1.264
4b4d FADFerredoxin-NADP reductase / 1.237
2bgi FADNADPH:ferredoxin reductase / 1.236
3crz FADFerredoxin--NADP+ reductase / 1.213
2qdx FADFerredoxin--NADP+ reductase / 1.195
4fk8 FADFerredoxin--NADP reductase / 1.108
4k1x FADNADPH:ferredoxin reductase / 1.001
1cqx FADFlavohemoprotein / 0.907
1a8p FADFerredoxin--NADP reductase / 0.877
1amo FADNADPH--cytochrome P450 reductase / 0.861
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.859
3qfs FADNADPH--cytochrome P450 reductase / 0.842
2bn4 FADNADPH--cytochrome P450 reductase / 0.828
3qe2 FADNADPH--cytochrome P450 reductase / 0.804
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.787
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.785
3fpk FADFerredoxin-NADP reductase / 0.780
2vyq FADFerredoxin--NADP reductase 1.18.1.2 0.774
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.769
1j9z FADNADPH--cytochrome P450 reductase / 0.764
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.761
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.747
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.746
3qfr FADNADPH--cytochrome P450 reductase / 0.744
3ojw FADNADPH--cytochrome P450 reductase / 0.742
4y7c FADNADPH--cytochrome P450 reductase / 0.742
3qfc FADNADPH--cytochrome P450 reductase / 0.733
4y9r FADNADPH--cytochrome P450 reductase / 0.732
3qft FADNADPH--cytochrome P450 reductase / 0.730
4yaf FADNADPH--cytochrome P450 reductase / 0.728
4yau FADNADPH--cytochrome P450 reductase / 0.726
1tll FADNitric oxide synthase, brain 1.14.13.39 0.721
4y9u FADNADPH--cytochrome P450 reductase / 0.721
1ja1 FADNADPH--cytochrome P450 reductase / 0.720
1w34 FADFerredoxin--NADP reductase 1.18.1.2 0.719
1gvh FADFlavohemoprotein / 0.717
2gpj FADSiderophore-interacting protein / 0.715
2eix FADNADH-cytochrome b5 reductase / 0.710
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.708
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.703
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.702
2bpo FADNADPH--cytochrome P450 reductase / 0.702
1efv FADElectron transfer flavoprotein subunit alpha, mitochondrial / 0.700
3ojx FADNADPH--cytochrome P450 reductase / 0.700
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.699
3vy2 FMNFMN-binding protein / 0.697
1efp FADElectron transfer flavoprotein subunit alpha / 0.695
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.695
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.694
1cnf FADNitrate reductase [NADH] 1.7.1.1 0.693
1usc FMNMonooxygenase / 0.693
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.689
5cho FADFlavin reductase / 0.689
4eer FMNPhototropin-2 2.7.11.1 0.688
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.687
3a20 FMNFMN-binding protein / 0.687
1wlk FMNFMN-binding protein / 0.686
2nr4 FMNConserved protein / 0.686
3a6r FMNFMN-binding protein / 0.686
2bf4 FADNADPH--cytochrome P450 reductase / 0.682
2e83 FMNFMN-binding protein / 0.682
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.682
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.680
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.679
4eep FMNPhototropin-2 2.7.11.1 0.677
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.677
3e4v FMNUncharacterized protein / 0.675
4eet FMNPhototropin-2 2.7.11.1 0.675
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.674
3amf FMNFMN-binding protein / 0.674
4yao FADNADPH--cytochrome P450 reductase / 0.674
1b2r FADFerredoxin--NADP reductase 1.18.1.2 0.673
3a6q FMNFMN-binding protein / 0.672
3vy5 FMNFMN-binding protein / 0.671
1gaw FADFerredoxin / 0.670
3awh FMNFMN-binding protein / 0.670
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.670
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.669
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.669
1eje FMNProtein MTH_152 / 0.668
2rc5 FADFerredoxin--NADP reductase / 0.667
2rc6 FADFerredoxin--NADP reductase / 0.666
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.664
2pia FMNPhthalate dioxygenase reductase / 0.664
2pr5 FMNBlue-light photoreceptor / 0.664
1flm FMNFMN-binding protein / 0.660
2igo FADPyranose 2-oxidase / 0.660
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.659
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.658
1wli FMNFMN-binding protein / 0.657
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.657
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.657
5j3w FMNSensory box protein / 0.657
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.656
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.655
3vo2 FADFerredoxin--NADP reductase / 0.653
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.652
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.650