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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2v5u FMN Flavodoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2v5u FMNFlavodoxin / 1.324
1czn FMNFlavodoxin / 1.128
1ofv FMNFlavodoxin / 1.119
3esz FMNFlavodoxin / 1.070
3esy FMNFlavodoxin / 1.040
1ahn FMNFlavodoxin 1 / 0.979
1akr FMNFlavodoxin / 0.912
2v5v FMNFlavodoxin / 0.910
3f6s FMNFlavodoxin / 0.910
4oxx FMNCindoxin / 0.908
1wsb FMNFlavodoxin / 0.905
1azl FMNFlavodoxin / 0.899
1j8q FMNFlavodoxin / 0.887
2fx2 FMNFlavodoxin / 0.884
1yob FMNFlavodoxin 2 / 0.868
5xra FMNCannabinoid receptor 1 / 0.859
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.856
1akw FMNFlavodoxin / 0.852
1j9g FMNFlavodoxin / 0.849
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.829
1xyv FMNFlavodoxin / 0.822
1xyy FMNFlavodoxin / 0.819
3f90 FMNFlavodoxin / 0.810
1fx1 FMNFlavodoxin / 0.808
4fx2 FMNFlavodoxin / 0.807
2mok FMNFlavodoxin 1 / 0.806
5tgz FMNCannabinoid receptor 1 / 0.779
1c7f FMNFlavodoxin / 0.775
5xr8 FMNCannabinoid receptor 1 / 0.774
2bf4 FMNNADPH--cytochrome P450 reductase / 0.772
2fcr FMNFlavodoxin / 0.770
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.768
2ohh FMNType A flavoprotein FprA 1 0.763
4y7c FMNNADPH--cytochrome P450 reductase / 0.761
3qfr FMNNADPH--cytochrome P450 reductase / 0.759
1amo FMNNADPH--cytochrome P450 reductase / 0.756
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.756
4yao FMNNADPH--cytochrome P450 reductase / 0.755
1ja0 FMNNADPH--cytochrome P450 reductase / 0.747
2bn4 FMNNADPH--cytochrome P450 reductase / 0.746
3n39 FMNProtein NrdI / 0.732
3qe2 FMNNADPH--cytochrome P450 reductase / 0.726
1aku FMNFlavodoxin / 0.719
4bmo FMNProtein NrdI / 0.716
3n3a FMNProtein NrdI / 0.714
2ohi FMNType A flavoprotein FprA 1 0.713
4j8p FMNFlavodoxin / 0.705
1bu5 RBFFlavodoxin / 0.698
5f12 FMNNAD(P)H dehydrogenase (quinone) / 0.697
4bmp FMNProtein NrdI / 0.695
3g5m FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.694
3n3b FMNProtein NrdI / 0.688
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.686
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.685
1ych FMNNitric oxide reductase 1 0.683
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.683
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.682
1ycg FMNNitric oxide reductase 1 0.681
1qr2 FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.678
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.677
5fx2 FMNFlavodoxin / 0.677
1j9z FMNNADPH--cytochrome P450 reductase / 0.675
5a8a FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.675
2ohj FMNType A flavoprotein FprA 1 0.672
4zvn FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.671
2vxa RBFDodecin / 0.670
3ojw FMNNADPH--cytochrome P450 reductase / 0.670
4gde FDAUDP-galactopyranose mutase / 0.669
2q9u FMNA-type flavoprotein / 0.666
4qoe FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.664
1ycf FMNNitric oxide reductase 1 0.662
3ojx FMNNADPH--cytochrome P450 reductase / 0.662
3kaq FMNFlavodoxin / 0.660
3utf FDAUDP-galactopyranose mutase / 0.660
2w5u FMNFlavodoxin / 0.657
4n9q FMNFMN-dependent NADH-azoreductase 1 / 0.657
3f6r FMNFlavodoxin / 0.656
1egd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.655
1t5b FMNFMN-dependent NADH-azoreductase / 0.654
5a89 FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.654
1ja1 FMNNADPH--cytochrome P450 reductase / 0.653
3eo8 FMNPutative nitroreductase / 0.653
4u8m FDAUDP-galactopyranose mutase / 0.653
1jqi FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 0.652
3nf4 FADAcyl-CoA dehydrogenase domain-containing protein / 0.651
1g63 FMNEpidermin decarboxylase 4.1.1 0.650
3lcm FADPutative oxidoreductase / 0.650