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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2rc4 ACO Histone acetyltransferase KAT6A

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2rc4 ACOHistone acetyltransferase KAT6A / 1.111
2ozu ACOHistone acetyltransferase KAT6A / 0.926
1mj9 COAHistone acetyltransferase ESA1 / 0.881
3to6 LYS_CMCHistone acetyltransferase ESA1 / 0.843
2ou2 ACOHistone acetyltransferase KAT5 / 0.838
5kf9 ACOPredicted acetyltransferase / 0.832
2y0m ACOHistone acetyltransferase KAT8 / 0.822
1mjb ACOHistone acetyltransferase ESA1 / 0.821
5kf8 ACOPredicted acetyltransferase / 0.819
1mja COAHistone acetyltransferase ESA1 / 0.817
5kf2 ACOPredicted acetyltransferase / 0.817
2cns ACORibosomal-protein-alanine acetyltransferase / 0.814
5kgj ACOPredicted acetyltransferase / 0.805
1fy7 COAHistone acetyltransferase ESA1 / 0.804
2cnt COARibosomal-protein-alanine acetyltransferase / 0.798
5kf1 ACOPredicted acetyltransferase / 0.793
2fiw ACOGCN5-related N-acetyltransferase:Aminotransferase, class-II / 0.791
4ag7 COAGlucosamine 6-phosphate N-acetyltransferase / 0.789
4lx9 ACON-alpha-acetyltransferase 2.3.1 0.788
5kgp ACOPredicted acetyltransferase / 0.787
1i12 ACOGlucosamine 6-phosphate N-acetyltransferase / 0.778
1bob ACOHistone acetyltransferase type B catalytic subunit / 0.777
5kgh ACOPredicted acetyltransferase / 0.776
3vwe COAAlpha-tubulin N-acetyltransferase 1 / 0.768
2vez ACOGlucosamine 6-phosphate acetyltransferase, putative / 0.767
2r8v ACOAmino-acid acetyltransferase / 0.763
3exn ACOProbable acetyltransferase / 0.761
2a4n COAAac(6')-Ii protein / 0.757
2b3v ACODiamine acetyltransferase 1 / 0.757
1qsm ACOHistone acetyltransferase HPA2 / 0.755
2giv ACOHistone acetyltransferase KAT8 / 0.755
3vwd ACOAlpha-tubulin N-acetyltransferase 1 / 0.755
3mgd ACOPredicted acetyltransferase / 0.752
2vxk COAGlucosamine 6-phosphate acetyltransferase, putative / 0.750
1l0c COTSerotonin N-acetyltransferase / 0.742
4kub COAUncharacterized protein / 0.742
2fxf ACODiamine acetyltransferase 1 / 0.741
1cjw COTSerotonin N-acetyltransferase / 0.740
4b5o ACOAlpha-tubulin N-acetyltransferase 1 / 0.740
1p0h COAMycothiol acetyltransferase 2.3.1.189 0.739
4r3k COAN-alpha-acetyltransferase 2.3.1 0.739
1qsn COAHAT A1 / 0.734
4kvx ACON-terminal acetyltransferase A complex catalytic subunit ard1 2.3.1.88 0.733
2bei ACODiamine acetyltransferase 2 2.3.1.57 0.731
2x7b COAN-alpha-acetyltransferase 2.3.1 0.727
5h86 BCOHistone acetyltransferase KAT2A 2.3.1.48 0.726
5h84 1VUHistone acetyltransferase KAT2A 2.3.1.48 0.725
2cy2 ACOProbable acetyltransferase / 0.724
1ib1 COTSerotonin N-acetyltransferase / 0.721
1qsr ACOHAT A1 / 0.721
2zpa ACOtRNA(Met) cytidine acetyltransferase TmcA / 0.721
1kux CA3Serotonin N-acetyltransferase / 0.720
1pua COAHAT A1 / 0.720
4xpd ACON-terminal acetyltransferase A complex subunit NAT5 2.3.1 0.719
4mxe ACON-acetyltransferase ESCO1 2.3.1 0.714
1s5k COAAminoglycoside N(6')-acetyltransferase type 1 / 0.713
4zm6 ACON-acetyl-beta-D glucosaminidase / 0.711
4hkf ACOAlpha-tubulin N-acetyltransferase 1 / 0.710
3s6f COAUncharacterized protein / 0.708
1pu9 COAHAT A1 / 0.707
1m4i COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.705
3d2p COAAmino-acid acetyltransferase / 0.705
4jwp ACOGCN5-related N-acetyltransferase / 0.705
1s3z COAAminoglycoside N(6')-acetyltransferase type 1 / 0.703
1z4r ACOHistone acetyltransferase KAT2A 2.3.1.48 0.699
4cry ACOPanD regulatory factor / 0.698
2c27 ACOMycothiol acetyltransferase 2.3.1.189 0.696
2psw COAN-alpha-acetyltransferase 50 / 0.695
1bo4 COAAminoglycoside-(3)-N-acetyltransferase / 0.691
2jdd ACOProbable acetyltransferase / 0.688
4ua3 COAN-alpha-acetyltransferase 40 2.3.1 0.688
3fbu COAAcetyltransferase, GNAT family / 0.687
4xnh ACON-terminal acetyltransferase A complex subunit NAT5 2.3.1 0.686
3d2m COAAmino-acid acetyltransferase / 0.683
4b5p ACOAlpha-tubulin N-acetyltransferase 1 / 0.683
4if5 ACOAlpha-tubulin N-acetyltransferase 1 / 0.683
1p0h ACOMycothiol acetyltransferase 2.3.1.189 0.680
2vzz SCAPutative succinyl-CoA transferase Rv0802c 2.8.3 0.679
4qvt ACOAcetyltransferase YpeA 2.3.1 0.679
4ava ACOAcetyltransferase Pat 2.3.1 0.674
3q33 ACOHistone acetyltransferase RTT109 2.3.1.48 0.673
2q4v ACODiamine acetyltransferase 2 2.3.1.57 0.671
2ft0 ACOdTDP-fucosamine acetyltransferase / 0.670
4u9v ACON-alpha-acetyltransferase 40 2.3.1 0.669
4u9y COAAlpha-tubulin N-acetyltransferase 1 / 0.668
3pgp ACOUncharacterized protein / 0.667
5kf2 COAPredicted acetyltransferase / 0.667
3k9u ACOSpermidine N(1)-acetyltransferase / 0.664
3te4 ACODopamine N-acetyltransferase / 0.663
4gs4 ACOAlpha-tubulin N-acetyltransferase 1 / 0.663
5kf8 COAPredicted acetyltransferase / 0.663
1m1d LYXHAT A1 / 0.662
2bue COAAAC(6')-Ib / 0.661
3zj0 ACOPutative acetyltransferase OgpAT / 0.661
4crz ACOPanD regulatory factor / 0.659
1cm0 COAHistone acetyltransferase KAT2B 2.3.1.48 0.657
1tiq COASpermidine/spermine N(1)-acetyltransferase / 0.657
1v0c ACOAAC(6')-Ib / 0.657
1ghe ACOAcetyltransferase 2.3.1 0.654
1m4d COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.654
3f0a ACOSpermidine N(1)-acetyltransferase / 0.653
1wwz ACOUncharacterized protein / 0.652