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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2r8v ACO Amino-acid acetyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2r8v ACOAmino-acid acetyltransferase / 1.220
3d2m COAAmino-acid acetyltransferase / 0.991
5kf8 ACOPredicted acetyltransferase / 0.885
5kgp ACOPredicted acetyltransferase / 0.881
5kf1 ACOPredicted acetyltransferase / 0.879
5kf9 ACOPredicted acetyltransferase / 0.873
1ghe ACOAcetyltransferase 2.3.1 0.868
5kf2 ACOPredicted acetyltransferase / 0.863
4lx9 ACON-alpha-acetyltransferase 2.3.1 0.862
2x7b COAN-alpha-acetyltransferase 2.3.1 0.842
2cns ACORibosomal-protein-alanine acetyltransferase / 0.830
5kgh ACOPredicted acetyltransferase / 0.825
2y0m ACOHistone acetyltransferase KAT8 / 0.823
4r3k COAN-alpha-acetyltransferase 2.3.1 0.823
3pgp ACOUncharacterized protein / 0.816
1ozp ACOMycothiol acetyltransferase 2.3.1.189 0.796
2ou2 ACOHistone acetyltransferase KAT5 / 0.793
1wwz ACOUncharacterized protein / 0.790
2jdd ACOProbable acetyltransferase / 0.788
3to6 LYS_CMCHistone acetyltransferase ESA1 / 0.787
1p0h COAMycothiol acetyltransferase 2.3.1.189 0.781
5kgj ACOPredicted acetyltransferase / 0.778
2bsw CAOProbable acetyltransferase / 0.776
4kvx ACON-terminal acetyltransferase A complex catalytic subunit ard1 2.3.1.88 0.775
4ag7 COAGlucosamine 6-phosphate N-acetyltransferase / 0.768
4jwp ACOGCN5-related N-acetyltransferase / 0.767
2rc4 ACOHistone acetyltransferase KAT6A / 0.763
1pu9 COAHAT A1 / 0.761
1qsm ACOHistone acetyltransferase HPA2 / 0.761
3te4 ACODopamine N-acetyltransferase / 0.756
2bei ACODiamine acetyltransferase 2 2.3.1.57 0.755
2a4n COAAac(6')-Ii protein / 0.754
1kuv CA5Serotonin N-acetyltransferase / 0.753
5h86 BCOHistone acetyltransferase KAT2A 2.3.1.48 0.753
2ozu ACOHistone acetyltransferase KAT6A / 0.752
2jdc CAOProbable acetyltransferase / 0.751
3k9u ACOSpermidine N(1)-acetyltransferase / 0.751
1fy7 COAHistone acetyltransferase ESA1 / 0.748
4zm6 ACON-acetyl-beta-D glucosaminidase / 0.748
2giv ACOHistone acetyltransferase KAT8 / 0.747
1i12 ACOGlucosamine 6-phosphate N-acetyltransferase / 0.744
2b3v ACODiamine acetyltransferase 1 / 0.739
3d2p COAAmino-acid acetyltransferase / 0.738
2vez ACOGlucosamine 6-phosphate acetyltransferase, putative / 0.734
1l0c COTSerotonin N-acetyltransferase / 0.732
3r1k COAN-acetyltransferase Eis / 0.732
1mja COAHistone acetyltransferase ESA1 / 0.729
1mjb ACOHistone acetyltransferase ESA1 / 0.729
2cy2 ACOProbable acetyltransferase / 0.727
1mj9 COAHistone acetyltransferase ESA1 / 0.726
3bj7 COADiamine acetyltransferase 1 / 0.719
1cjw COTSerotonin N-acetyltransferase / 0.718
3exn ACOProbable acetyltransferase / 0.718
2c27 ACOMycothiol acetyltransferase 2.3.1.189 0.716
4qvt ACOAcetyltransferase YpeA 2.3.1 0.715
1pua COAHAT A1 / 0.714
4hkf ACOAlpha-tubulin N-acetyltransferase 1 / 0.714
1qsn COAHAT A1 / 0.712
2zw4 COABleomycin acetyltransferase / 0.712
1j4j ACOAcetyltransferase 2.3.1 0.710
1qsr ACOHAT A1 / 0.710
1n71 COAAac(6')-Ii protein / 0.708
1bob ACOHistone acetyltransferase type B catalytic subunit / 0.702
1m4d COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.701
2ge3 ACOProbable acetyltransferase / 0.696
5kf2 COAPredicted acetyltransferase / 0.688
5h84 1VUHistone acetyltransferase KAT2A 2.3.1.48 0.687
5kf8 COAPredicted acetyltransferase / 0.685
4xpd ACON-terminal acetyltransferase A complex subunit NAT5 2.3.1 0.684
1m1d LYXHAT A1 / 0.683
3fbu COAAcetyltransferase, GNAT family / 0.680
1kuy COTSerotonin N-acetyltransferase / 0.678
2prb COAAminoglycoside 6-N-acetyltransferase type Ib11 / 0.678
2fxf ACODiamine acetyltransferase 1 / 0.676
2fiw ACOGCN5-related N-acetyltransferase:Aminotransferase, class-II / 0.674
3ryo ACON-acetyltransferase Eis / 0.673
3vwd ACOAlpha-tubulin N-acetyltransferase 1 / 0.673
3r95 ACOMccE protein / 0.672
4xnh ACON-terminal acetyltransferase A complex subunit NAT5 2.3.1 0.672
2q4v ACODiamine acetyltransferase 2 2.3.1.57 0.670
1z4r ACOHistone acetyltransferase KAT2A 2.3.1.48 0.669
1xvv CCQL-carnitine CoA-transferase / 0.667
2psw COAN-alpha-acetyltransferase 50 / 0.667
3f0a ACOSpermidine N(1)-acetyltransferase / 0.666
3r96 ACOMccE protein / 0.666
1s7n COAAcetyl transferase / 0.664
2cnt COARibosomal-protein-alanine acetyltransferase / 0.664
2zpa ACOtRNA(Met) cytidine acetyltransferase TmcA / 0.662
1s5k COAAminoglycoside N(6')-acetyltransferase type 1 / 0.661
4kub COAUncharacterized protein / 0.661
3mgd ACOPredicted acetyltransferase / 0.660
4u9z COAAlpha-tubulin N-acetyltransferase 1 / 0.660
4b5p ACOAlpha-tubulin N-acetyltransferase 1 / 0.659
2o28 COAGlucosamine 6-phosphate N-acetyltransferase / 0.658
1tiq COASpermidine/spermine N(1)-acetyltransferase / 0.652