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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2po7 CHD Ferrochelatase, mitochondrial 4.99.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2po7 CHDFerrochelatase, mitochondrial 4.99.1.1 1.028
3w1w CHDFerrochelatase, mitochondrial 4.99.1.1 0.865
2hrc CHDFerrochelatase, mitochondrial 4.99.1.1 0.857
2qd4 CHDFerrochelatase, mitochondrial 4.99.1.1 0.820
2pnj CHDFerrochelatase, mitochondrial 4.99.1.1 0.753
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
2puc GUNHTH-type transcriptional repressor PurR / 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4x86 CPSLarge proline-rich protein BAG6 / 0.681
4x86 CPSUbiquitin-like protein 4A / 0.681
3em0 CHDFatty acid-binding protein 6, ileal (gastrotropin) / 0.667
1tw4 CHDFatty acid-binding protein, liver / 0.661
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2jn3 JN3Fatty acid-binding protein, liver / 0.659
2lba CHOFatty acid binding protein 6 / 0.657