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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2oc9 IMH Purine nucleoside phosphorylase 2.4.2.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2oc9 IMHPurine nucleoside phosphorylase 2.4.2.1 0.872
1rr6 IMHPurine nucleoside phosphorylase 2.4.2.1 0.795
1rt9 IMHPurine nucleoside phosphorylase 2.4.2.1 0.790
1b8n IMGPurine nucleoside phosphorylase 2.4.2.1 0.787
2oc4 IMHPurine nucleoside phosphorylase 2.4.2.1 0.769
1b8o IMHPurine nucleoside phosphorylase 2.4.2.1 0.766
1rct NOSPurine nucleoside phosphorylase 2.4.2.1 0.739
1a9s NOSPurine nucleoside phosphorylase 2.4.2.1 0.728
2a0x DIHPurine nucleoside phosphorylase 2.4.2.1 0.727
2p4s DIHAGAP005945-PA / 0.720
3k8q 22APurine nucleoside phosphorylase 2.4.2.1 0.715
1v45 3DGPurine nucleoside phosphorylase 2.4.2.1 0.706
3bgs DIHPurine nucleoside phosphorylase 2.4.2.1 0.705
2a0y DIHPurine nucleoside phosphorylase 2.4.2.1 0.703
2a0w DIHPurine nucleoside phosphorylase 2.4.2.1 0.701
3iex GMPPurine nucleoside phosphorylase / 0.701
1rsz DIHPurine nucleoside phosphorylase 2.4.2.1 0.698
2q7o IMHPurine nucleoside phosphorylase 2.4.2.1 0.697
1pf7 IMHPurine nucleoside phosphorylase 2.4.2.1 0.690
4ear IM5Purine nucleoside phosphorylase 2.4.2.1 0.689
1a9p 9DIPurine nucleoside phosphorylase 2.4.2.1 0.686
1q1g MTIPurine nucleoside phosphorylase / 0.669
1k27 MTMS-methyl-5'-thioadenosine phosphorylase / 0.651