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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2nr4 FMN Conserved protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2nr4 FMNConserved protein / 0.995
2iml FMNUncharacterized protein / 0.876
2ptf FMNUncharacterized protein MTH_863 / 0.874
1usc FMNMonooxygenase / 0.743
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.716
3bnk FMNFlavoredoxin / 0.710
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.708
2bgi FADNADPH:ferredoxin reductase / 0.706
2gpj FADSiderophore-interacting protein / 0.701
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.695
3crz FADFerredoxin--NADP+ reductase / 0.693
3fpk FADFerredoxin-NADP reductase / 0.692
2vnh FADNADPH:ferredoxin reductase / 0.691
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.691
1eje FMNProtein MTH_152 / 0.688
2bgj FADNADPH:ferredoxin reductase / 0.688
4b4d FADFerredoxin-NADP reductase / 0.688
2vnj FADNADPH:ferredoxin reductase / 0.687
2vnk FADNADPH:ferredoxin reductase / 0.686
3a3b RBFLumazine protein / 0.686
2ou5 FMNPyridoxamine 5'-phosphate oxidase-related FMN-binding protein / 0.683
1pkv RBFRiboflavin synthase 2.5.1.9 0.679
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.679
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.676
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.675
1j9z FADNADPH--cytochrome P450 reductase / 0.674
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.674
1gaw FADFerredoxin / 0.673
4fk8 FADFerredoxin--NADP reductase / 0.673
2qdx FADFerredoxin--NADP+ reductase / 0.672
4f07 FADStyrene monooxygenase component 2 / 0.672
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.670
1amo FADNADPH--cytochrome P450 reductase / 0.668
4k1x FADNADPH:ferredoxin reductase / 0.668
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.664
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.663
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.663
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.662
4y9u FADNADPH--cytochrome P450 reductase / 0.662
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.661
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.660
2bf4 FADNADPH--cytochrome P450 reductase / 0.658
4rhe FMNFlavin prenyltransferase UbiX / 0.656
1a8p FADFerredoxin--NADP reductase / 0.655
2vyq FADFerredoxin--NADP reductase 1.18.1.2 0.655
1ja0 FADNADPH--cytochrome P450 reductase / 0.654
3e4v FMNUncharacterized protein / 0.653
1tll FADNitric oxide synthase, brain 1.14.13.39 0.652
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.651
3ojw FADNADPH--cytochrome P450 reductase / 0.651
3qe2 FADNADPH--cytochrome P450 reductase / 0.651
1c7f FMNFlavodoxin / 0.650
3qfc FADNADPH--cytochrome P450 reductase / 0.650