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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2jn3 JN3 Fatty acid-binding protein, liver

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2jn3 JN3Fatty acid-binding protein, liver / 1.234
2qo5 CHDFatty acid-binding protein 10-A, liver basic / 0.779
3w5t LHPVitamin D3 receptor / 0.762
3w5p 4OAVitamin D3 receptor / 0.761
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
2puc GUNHTH-type transcriptional repressor PurR / 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4e5l DBHPolymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
3w5r LOAVitamin D3 receptor / 0.730
3w5q 3KLVitamin D3 receptor / 0.724
2rlc CHDCholoylglycine hydrolase 3.5.1.24 0.720
3em0 CHDFatty acid-binding protein 6, ileal (gastrotropin) / 0.714
3g1r FIT3-oxo-5-beta-steroid 4-dehydrogenase / 0.714
2mm3 CHOGastrotropin / 0.705
4k7a DHTAndrogen receptor / 0.705
4a84 DXCMajor pollen allergen Bet v 1-A / 0.696
3cot STR3-oxo-5-beta-steroid 4-dehydrogenase / 0.694
2qd4 CHDFerrochelatase, mitochondrial 4.99.1.1 0.691
2hrc CHDFerrochelatase, mitochondrial 4.99.1.1 0.684
4j24 ESTEstrogen receptor beta / 0.683
2lba CHOFatty acid binding protein 6 / 0.682
3zqt TESAndrogen receptor / 0.678
2ab2 SNLMineralocorticoid receptor / 0.676
1fm4 DXCMajor pollen allergen Bet v 1-L / 0.675
5hyr ESTEstrogen receptor / 0.675
1zhz ERGOxysterol-binding protein homolog 4 / 0.674
2j7x ESTEstrogen receptor beta / 0.672
4x86 CPSLarge proline-rich protein BAG6 / 0.672
4x86 CPSUbiquitin-like protein 4A / 0.672
1tw4 CHDFatty acid-binding protein, liver / 0.670
1o1v TCHGastrotropin / 0.668
3cas ASD3-oxo-5-beta-steroid 4-dehydrogenase / 0.666
3uud ESTEstrogen receptor / 0.664
2pnj CHDFerrochelatase, mitochondrial 4.99.1.1 0.663
3oll ESTEstrogen receptor beta / 0.663
4ple CPSNuclear receptor subfamily 5 group A member 2 / 0.663
4nky 3QZSteroid 17-alpha-hydroxylase/17,20 lyase / 0.662
1gs4 ZK5Androgen receptor / 0.661
2yja ESTEstrogen receptor / 0.661
3l0l HC3Nuclear receptor ROR-gamma / 0.661
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2po7 CHDFerrochelatase, mitochondrial 4.99.1.1 0.659
2qo6 CHDFatty acid-binding protein 10-A, liver basic / 0.656
4f4d CHDFerrochelatase, mitochondrial 4.99.1.1 0.654
2k62 ITLFatty acid-binding protein, liver / 0.653
2vdy HCYCorticosteroid-binding globulin / 0.653
3up0 D7SaceDAF-12 / 0.653
1lnm DTXBilin-binding protein / 0.652
3dey DHTEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.650
3klm DHTEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.650