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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2i02 FMN Pyridoxamine 5'-phosphate oxidase-related, FMN-binding

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 1.264
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.858
2ou5 FMNPyridoxamine 5'-phosphate oxidase-related FMN-binding protein / 0.811
4hmx FMNPyridoxamine 5'-phosphate oxidase / 0.758
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.755
3r5z F42Uncharacterized protein / 0.754
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.746
4hmw FMNPyridoxamine 5'-phosphate oxidase / 0.738
4ybn FADFlavin-nucleotide-binding protein / 0.735
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.730
5cho FADFlavin reductase / 0.725
3crz FADFerredoxin--NADP+ reductase / 0.724
1amo FADNADPH--cytochrome P450 reductase / 0.721
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.719
2pia FMNPhthalate dioxygenase reductase / 0.716
2ptf FMNUncharacterized protein MTH_863 / 0.712
3qe2 FADNADPH--cytochrome P450 reductase / 0.712
3r5y F42Uncharacterized protein / 0.712
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.711
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.709
3r5w F42Deazaflavin-dependent nitroreductase / 0.707
2hq9 FADMll6688 protein / 0.705
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.704
4b5n FMNNAD(P)H:flavin oxidoreductase Sye4 / 0.702
5ahk FADAcetolactate synthase II, large subunit / 0.702
1gaq FADFerredoxin / 0.701
2qdx FADFerredoxin--NADP+ reductase / 0.699
2vnk FADNADPH:ferredoxin reductase / 0.699
5dbj FADFADH2-dependent halogenase PltA / 0.699
2bf4 FADNADPH--cytochrome P450 reductase / 0.698
3in6 FMNUncharacterized protein / 0.698
1j9z FADNADPH--cytochrome P450 reductase / 0.697
2vnj FADNADPH:ferredoxin reductase / 0.696
1ja1 FADNADPH--cytochrome P450 reductase / 0.695
3ojw FADNADPH--cytochrome P450 reductase / 0.694
1ooq FMNOxygen-insensitive NAD(P)H nitroreductase / 0.692
1usc FMNMonooxygenase / 0.692
1cqx FADFlavohemoprotein / 0.691
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.690
1rz1 FADPhenol 2-hydroxylase component B / 0.688
3a3b RBFLumazine protein / 0.688
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.687
1nec FMNOxygen-insensitive NAD(P)H nitroreductase 1 0.687
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.686
2eix FADNADH-cytochrome b5 reductase / 0.685
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.685
3nix FADFlavoprotein/dehydrogenase / 0.684
4b4d FADFerredoxin-NADP reductase / 0.684
3a6r FMNFMN-binding protein / 0.681
4f07 FADStyrene monooxygenase component 2 / 0.681
4xq6 FMNDihydroorotate dehydrogenase (quinone) / 0.681
1ylu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.680
3ojx FADNADPH--cytochrome P450 reductase / 0.680
1kqc FMNOxygen-insensitive NAD(P)H nitroreductase / 0.679
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.679
1gjr FADFerredoxin--NADP reductase 1.18.1.2 0.678
1icv FMNOxygen-insensitive NAD(P)H nitroreductase / 0.677
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.677
3a6q FMNFMN-binding protein / 0.677
1ju2 FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.676
1ylr FMNOxygen-insensitive NAD(P)H nitroreductase / 0.676
2bgi FADNADPH:ferredoxin reductase / 0.676
2ed4 FAD4-hydroxyphenylacetate 3-monooxygenase reductase component 1.5.1.36 0.676
2gpj FADSiderophore-interacting protein / 0.676
2nr4 FMNConserved protein / 0.676
1icu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.675
3e4v FMNUncharacterized protein / 0.675
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.675
3vy2 FMNFMN-binding protein / 0.675
3x21 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.675
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.674
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.674
3qfc FADNADPH--cytochrome P450 reductase / 0.673
3qfr FADNADPH--cytochrome P450 reductase / 0.673
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.671
1tdo FADL-amino-acid oxidase 1.4.3.2 0.671
3p7n FMNLight-activated DNA-binding protein EL222 / 0.671
3qft FADNADPH--cytochrome P450 reductase / 0.671
1eje FMNProtein MTH_152 / 0.670
1yki FMNOxygen-insensitive NAD(P)H nitroreductase / 0.670
1kqd FMNOxygen-insensitive NAD(P)H nitroreductase / 0.667
2bpo FADNADPH--cytochrome P450 reductase / 0.667
3fpk FADFerredoxin-NADP reductase / 0.666
4rhe FMNFlavin prenyltransferase UbiX / 0.666
3awh FMNFMN-binding protein / 0.665
3bnk FMNFlavoredoxin / 0.665
4iv6 FDAIsovaleryl-CoA dehydrogenase / 0.665
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.664
1flm FMNFMN-binding protein / 0.664
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.664
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.664
3qfs FADNADPH--cytochrome P450 reductase / 0.664
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.663
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.663
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.663
2c3c FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.663
1kqb FMNOxygen-insensitive NAD(P)H nitroreductase / 0.662
3b04 OOPIsopentenyl-diphosphate delta-isomerase / 0.662
3vy5 FMNFMN-binding protein / 0.662
5buk FADFADH2-dependent halogenase / 0.662
3amf FMNFMN-binding protein / 0.661
1ci0 FMNPyridoxamine 5'-phosphate oxidase 1.4.3.5 0.659
1wlk FMNFMN-binding protein / 0.659
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.659
1ja0 FADNADPH--cytochrome P450 reductase / 0.658
1cc2 FADCholesterol oxidase 1.1.3.6 0.657
2hay FMNPutative NAD(P)H-flavin oxidoreductase / 0.657
3gwd FADCyclohexanone monooxygenase / 0.657
3x22 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.657
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 0.657
3a20 FMNFMN-binding protein / 0.656
1wli FMNFMN-binding protein / 0.655
2e83 FMNFMN-binding protein / 0.655
4kto FADPutative isovaleryl-CoA dehydrogenase protein / 0.655
3bem FMNPutative NAD(P)H nitroreductase MhqN 1 0.654
3of4 FMNNitroreductase / 0.654
4hia FMNLOV protein / 0.653
4fk8 FADFerredoxin--NADP reductase / 0.652
1wv4 FMNPyridoxine/pyridoxamine 5'-phosphate oxidase / 0.651
1x0p FADTll0078 protein / 0.651
2iml FMNUncharacterized protein / 0.651
5hsa FASAlcohol oxidase 1 1.1.3.13 0.651
4qvb F42F420H(2)-dependent reductase Rv1155 1.4.3.5 0.650