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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2hfo FMN Activator of photopigment and puc expression

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2hfo FMNActivator of photopigment and puc expression / 1.143
2hfn FMNActivator of photopigment and puc expression / 0.881
2byc FMNBlue-light receptor of the BLUF-family / 0.866
1x0p FADTll0078 protein / 0.839
2iyg FMNAppA, antirepressor of ppsR, sensor of blue light / 0.802
3gfx FMNUncharacterized protein / 0.801
3gfz FMNUncharacterized protein / 0.798
3gg1 FMNUncharacterized protein / 0.780
3gfy FMNUncharacterized protein / 0.750
1yrx FMNAppA protein / 0.748
4hh0 FMNAppA protein / 0.735
4kuk RBFPutative blue-light photoreceptor / 0.731
4yus FMNFamily 3 adenylate cyclase / 0.730
2iyi FMNAppA, antirepressor of ppsR, sensor of blue light / 0.724
4r38 RBFBlue-light-activated histidine kinase 2 2.7.13.3 0.724
3gg0 FMNUncharacterized protein / 0.721
1n9l FMNPutative blue light receptor / 0.698
1zpt FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.696
2z6c FMNPhototropin-1 2.7.11.1 0.691
5c2t FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.689
2z6d FMNPhototropin-2 2.7.11.1 0.685
4irn FADAnaB / 0.684
1bwk FMNNADPH dehydrogenase 1 1.6.99.1 0.682
1oya FMNNADPH dehydrogenase 1 1.6.99.1 0.681
3gag FMNPutative NADH dehydrogenase NAD(P)H nitroreductase / 0.681
2qcu FADAerobic glycerol-3-phosphate dehydrogenase 1.1.5.3 0.680
1nb9 RBFRiboflavin kinase 2.7.1.26 0.679
3sm8 FNKFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.678
2pdt FADVivid PAS protein VVD / 0.676
1eje FMNProtein MTH_152 / 0.675
2pan FADGlyoxylate carboligase 4.1.1.47 0.675
5cpm FNRNADH:flavin oxidoreductase / 0.674
1gth FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.673
3clu FADElectron transfer flavoprotein subunit alpha / 0.673
4m5p FMNNADPH dehydrogenase / 0.673
5j3w FMNSensory box protein / 0.672
4cnk FADL-amino acid oxidase / 0.671
1h7w FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.670
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.670
1b4v FADCholesterol oxidase 1.1.3.6 0.669
1gte FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.669
3fst FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.669
1zmc FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.668
2ign FADPyranose 2-oxidase / 0.667
4eeu FMNPhototropin-2 2.7.11.1 0.667
1knp FADL-aspartate oxidase 1.4.3.16 0.666
4dja FAD(6-4) photolyase / 0.666
4e2d FMNDehydrogenase / 0.665
4tmb FMNOld yellow enzyme / 0.665
3pft FMNFlavin reductase / 0.663
4opl FDAConserved Archaeal protein / 0.663
1icp FMN12-oxophytodienoate reductase 1 1.3.1.42 0.662
3atz FMNProstaglandin F2a synthase / 0.661
3ept FDAPutative FAD-monooxygenase / 0.661
4h6k FMNNADPH dehydrogenase 1 1.6.99.1 0.661
2h8x FMNXenA / 0.660
2pr5 FMNBlue-light photoreceptor / 0.660
5c3j FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.660
1icq FMN12-oxophytodienoate reductase 1 1.3.1.42 0.659
1zmd FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.658
3f03 FMNPentaerythritol tetranitrate reductase / 0.658
3p67 FMNPentaerythritol tetranitrate reductase / 0.658
3p8i FMNPentaerythritol tetranitrate reductase / 0.658
4fwe FADLysine-specific histone demethylase 1B 1 0.658
1oyc FMNNADPH dehydrogenase 1 1.6.99.1 0.657
2vig FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.1 0.657
3clr FADElectron transfer flavoprotein subunit alpha / 0.657
3p62 FMNPentaerythritol tetranitrate reductase / 0.657
2gh5 FADGlutathione reductase, mitochondrial 1.8.1.7 0.656
4d5g FADCyclohexane-1,2-dione hydrolase 3.7.1.11 0.656
4utl FNRXenobiotic reductase / 0.656
2q3r FMN12-oxophytodienoate reductase 1 1.3.1.42 0.655
3cty FADProbable thioredoxin reductase / 0.655
4gu5 FADCryptochrome-1 / 0.655
4qi5 FADCellobiose dehydrogenase / 0.655
2j09 FMNDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.654
4e2b FMNDehydrogenase / 0.654
4m52 FADDihydrolipoyl dehydrogenase 1.8.1.4 0.654
4yx6 FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.653
1n4u FAECholesterol oxidase 1.1.3.6 0.652
1n4w FADCholesterol oxidase 1.1.3.6 0.652
4cdm FADDeoxyribodipyrimidine photolyase / 0.652
4hsu FADLysine-specific histone demethylase 1B 1 0.652
4l82 FMNUncharacterized protein / 0.652
4rnv FMNNADPH dehydrogenase 1 1.6.99.1 0.652
3cnj FADCholesterol oxidase 1.1.3.6 0.651
3sfe FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.651
4yjd FADD-amino-acid oxidase 1.4.3.3 0.651
1ea0 FMNGlutamate synthase [NADPH] large chain 1.4.1.13 0.650
4cnj FADL-amino acid oxidase / 0.650
4qnw FMNChanoclavine-I aldehyde reductase easA / 0.650